RnoINT0079517 @ rn6
Intron Retention
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54207274-54208027:+
Coord C1 exon
chr17:54207274-54207383
Coord A exon
chr17:54207384-54207925
Coord C2 exon
chr17:54207926-54208027
Length
542 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTATTCTGTTCTTTTGTCAGCCA
3' ss Score
6.6
Exon sequences
Seq C1 exon
CAAGCTGTTGAACAGCAGATCCAGAGTCACAGAGAAACCCACCAAAAACAAATCAGTAGTTTACGAGATGAAGTTGAGGCAAAGGAAAAGCTAATCACTGATCTCCAAGA
Seq A exon
GTAAGTACTGTGCTTTTCTCTGCGTTGGTAGCGACTGATTCAGGGAGGTTGGCTCTTCAGACAGGAGGTACTGATGGACAGGCATCCTCATAGAAACCTTCTGTGTTCATTGAGATGAGGTTTTTTTTCTTCTCTTCGAATGTTTTCTGTCTTCACATATGTAGAGTATAAATTGGAGAGATCTGTGATAATTTGAGTAAAAAAATAAAGAAAATAAGTGATGACAAATTTTGTGAGATGGAGATAAAGGTGTGGGGAACAGATTGATCAGTGACTTAGTGACCATAGGAGAAATCCTAAATGACTTGAGGGTGGCCATGCCCTTCCTGTTTTACCCTCATGAAATCAGAGTAATGAGACCCTGACCAGTTGGCAGAAGAAATTGAGCTTGTCAAAGTTCAGGCCCAGGAAGATGGCAAGTTCCTAATCAGGAATATGTAGTAACATCCTATTTTAAAAGGCAGACCCCTTTAAAGAGTTAAATTTGGTGATGACGTTCAGATAACTTTTGAGGTTGAACTTTTATTCTGTTCTTTTGTCAG
Seq C2 exon
CCAAAACCAGAAGATGGTGTTGGAACAGGAGCGGCTAAGGGTGGAGCATGAGAGGCTAAAGGCTGTAGACCAGGAGAAGAGCAGGAAGCTGCATGAGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466:ENSRNOT00000023861:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCAGATCCAGAGTCACA
R:
GCTTCCTGCTCTTCTCCTGGT
Band lengths:
190-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]