BtaINT0082178 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018125 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:47395906-47396269:-
Coord C1 exon
chr2:47396221-47396269
Coord A exon
chr2:47395962-47396220
Coord C2 exon
chr2:47395906-47395961
Length
259 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATCATTATCGTCTCTGTAGTAT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTTTCCTATTTTGAGATCTACCTGGACAAAATCAGGGACTTACTTGATG
Seq A exon
GTGAGTAACCCGAATTCTTGTCCTTTGTTCTGTAACTACAGTCCAGGGAGGTTGAAATGTTTTACAGCCCTTCTGCTTCAGGAATTTATAGAGACGTTCTGTTGCCTTCAGGCTGTCTGCTTATTCTCAGCCAAAGCTTTAACTTGAGTTATTGCAGATTAGATCTGCCTATCTTCTGTAACAATTTCTATTTTTCCTCCAATACAGGGCCTTTAACTTTTCTTTTCTTCTTTGCATGTCATCATTATCGTCTCTGTAG
Seq C2 exon
TATCCAAGACAAACTTGGCTGTTCATGAAGATAAAAATAGAGTCCCGTACGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018125:ENSBTAT00000024127:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(6.8=100),PF142841=PcfJ=PU(8.2=47.1)
A:
NA
C2:
PF0022518=Kinesin=FE(7.7=100),PF142841=PcfJ=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]