HsaINT0088161 @ hg19
Intron Retention
Gene
ENSG00000168280 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:6325]
Coordinates
chr2:149798124-149798504:+
Coord C1 exon
chr2:149798124-149798172
Coord A exon
chr2:149798173-149798448
Coord C2 exon
chr2:149798449-149798504
Length
276 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TGTCATTCTCATCTTTTTAGTAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTACTTGATG
Seq A exon
GTAAGTAACCTCAGTGCTTGTCCTTTATTTGTTCTGTAACGAAAGTCCGGGGAGGTTGAAATGGTTTATCACACTTCTGCTTAAGGAATTAATGAAAATTTATAGAGATACTCTGTTGCCTTCAGGGTATATGTTTATTCTCAGCCAAGGCTTAAACTTGCATATTGCAAAGAGATTAGATTTGACTGTCTTTGTAACAAACTTCCATTTTTCCTCCAATATAGAGTCTTTAACTTTTATTTTCTTCTTTGCCTGCTGTCATTCTCATCTTTTTAG
Seq C2 exon
TATCCAAGACCAACTTGGCTGTTCATGAAGATAAAAACAGAGTCCCGTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168280-KIF5C:NM_004522:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(6.9=100)
A:
NA
C2:
PF0022518=Kinesin=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)