MmuINT0087352 @ mm9
Intron Retention
Gene
ENSMUSG00000026764 | Kif5c
Description
kinesin family member 5C [Source:MGI Symbol;Acc:MGI:1098269]
Coordinates
chr2:49549214-49549575:+
Coord C1 exon
chr2:49549214-49549262
Coord A exon
chr2:49549263-49549519
Coord C2 exon
chr2:49549520-49549575
Length
257 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATCATTTTCACCACCACAGTGT
3' ss Score
6.22
Exon sequences
Seq C1 exon
GTTTCCTATTTTGAGATCTACTTGGACAAAATAAGGGACTTGCTTGATG
Seq A exon
GTGAGTTCCACCTGAATGCATTGTGCTTGCTCTGTAGTTGAAGTCCGGGGTGGGGGTGGGGGGGGGGGTTGAGATGCGTTAGCATGCTTCTGCCTGGACAGCTGATGAAAATGTAGAGTGATGTTTGCCTTCAGGCTGTGTGCTCTTCCCAGCCACAGCTTAAACTTGCCTCTCGTCTGTAACCATAGCTATTCTTGGAGCACAGGGTTTTTAACTTCCCTTTCCTTCTTTGCATGCCATCATTTTCACCACCACAG
Seq C2 exon
TGTCCAAGACCAACTTGGCAGTTCATGAAGACAAAAACAGAGTCCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026764-Kif5c:NM_008449:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(5.1=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: