GgaINT0045218 @ galGal4
Intron Retention
Gene
ENSGALG00000012462 | kif5c
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE00]
Coordinates
chr7:34300855-34301728:+
Coord C1 exon
chr7:34300855-34300903
Coord A exon
chr7:34300904-34301672
Coord C2 exon
chr7:34301673-34301728
Length
769 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATCTCCATCTTTCTTTCTAGTGT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTTTCCTACTTTGAGATCTATTTGGACAAAATAAGGGACCTACTTGATG
Seq A exon
GTAAGTCTCACATTTTGCATATAACTACGTGGTGGTTGGTTTGGTTCGGGGCTTTCTTCTCCCTGCAGTGTTGGTTCAGTTCTGTCTTTGAGTGACTTAAGTTGAAGTTGTGTGACTGTGATTGGGTTTCTGAAAGAGAGTTCTGTAGTTTAAATCATCAATATTGGTGCTGCACTGTTCTGGCAGTGCTACCCAGCTTGGTTATCTGCCAGTGGGTACAGAGCCAAATGGAAGGGGCTGTTTCTGAGTCTTGCAAACTACCACTGGGTTTAGTGTAAAAAAGGATACAAAGGGTTTATTTTGGGGGTGTTTTTTTTTTTTAAGTTATTATTATTTTTTTCCTTTGCTTTGCTTCTCTTAGGTGGAATTTTATGGGAGATAACCATTTGTGTGTCTGTATGTTAATGAAAGTAACTCATGCTTTTTGAAATCAGCCTGAAGACAGGGAAATGTAAATCATAGTAACACTCAGGAGCATCTGTTCAAGGTTTTTGGAATTCCCATTGACCTGTCTTGGTCATACTAAGACGAGCAGTAAAGAAAAGGTCTTTTCTACAAAGGTAACTATAAAGAAACGGGTACAGGATCTACAGAAAAAGAAACAAAATATGTGTACAGAAATAGCGTTAGTTAATGAGGTGTAGGAAATTACTACACTCTGCGTTGACAGATTTAATATATTCAGAATATTTGCATTTTTGCGTTGTGTCTATATTTGACACAGTCTTATGTGTGGAATATTCCTCATGATCTCCATCTTTCTTTCTAG
Seq C2 exon
TGTCAAAGACAAACCTTGCCGTACATGAAGATAAGAACAGAGTTCCATACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012462:ENSGALT00000020366:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(11.5=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]