BtaINT0082644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001093 | KLHL23
Description
Bos taurus kelch-like 23 (Drosophila) (KLHL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001205507]
Coordinates
chr2:26631558-26636478:-
Coord C1 exon
chr2:26635266-26636478
Coord A exon
chr2:26631711-26635265
Coord C2 exon
chr2:26631558-26631710
Length
3555 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GATTTTAATTTAACACACAGGCG
3' ss Score
5.14
Exon sequences
Seq C1 exon
ATGGCTCTAAAAGGACAAGAAGATTATATTTACCTTTTCAAGGATACCACGCATCCAGTGGATTTTCTGGATGCATTCAGAACATTTTACTTGGATGGATTATTTACTGATATTACCCTTCAGTGTCCTTCAGGCATAATCTTCCATTGTCACCGAGCTGTTTTAGCTGCTTGCAGCAATTATTTTAAGGCAATGTTCACGGCTGACATGAAAGAAAAATTTAAAAATAAAATAAAGATCTCTGGCATCCACCATGATATCTTGGAAGGCCTTGTAAATTACGCGTACACTTCCCAAATTGAGATAACTAAAAGAAATGTTCAAAGCCTGCTTGAAGCAGCTGATCTGCTACAGTTCCTTTCAGTGAAGAAAGCATGTGAGCAGTTTTTGGTAAGGCACTTGGATATTGATAATTGTATTGGAATGCACTCCTTTGCAGAATTTCACGTGTGTCCAGAACTAGAGAAGGAATCTCGAAGAATTCTGTGCTCAAGGTTTAAGGAAGTATGGCAACAAGAAGAATTTCTGGAAATCAGCCTTGAAAAGTTTCTCTTTATCTTGTCCAGAAAGAATCTCAGTGTTTGGAAAGAAGAAGCTGTCATAGAGCCAGTTATTAAGTGGACTGCTCATGATGTAGAAAATCGAATTGAATGCCTATATAATCTATTAAGCTATATCAACATAGATGTAGATCCAGTGTATTTAAAAACAGCTTTAGGCCTTCAAAGAAGCTGCCTATTAACTGAAAATAAGATCCGATCTCTAATATACAATGCTTTGAATCCCATGCATAAAGAGATTTCTCAGCGATCCACAGCCACAATGTATATCATTGGAGGCTATTACTGGCACCCTTTATCAGAGGTACACATATGGGATCCTTTGACAAATGTTTGGATCCAAGGGGCAGAAATACCAGATTACACTAGGGAGAGCTATGGTGTTACATGTTTGGGACCCAATATTTATGTAACCGGGGGTTACAGAACTGATAACATTGAAGCTCTTGACACAGTGTGGATCTATAACAGTGAAGGTGATGAATGGACAGAAGGCTTGCCAATGCTCAATGCCAGGTATTACCACTGTGCAGTCACCTTGGGTGGCTGTGTGTATGCTTTAGGTGGCTACAGAAAAGGGGCTCCGGCAGAAGAGGCTGAGTTCTATGATCCGTTGAAAGAGAAGTGGATTCCTATTGCAAACATGATTAAAG
Seq A exon
GTAAGTGCAGACTGTGTTTCTTCTGTACTTTTTAGGTGTTTGAGATGAGACAAAGGGTCTCAGATAACGTTATAAAAAATGCATCACTTGGGAATGCTACCTTGGAGTTATAGTTGGATTATACAAATCAAATAATGCTACCTAGAATGTTCGAGGTAAAAATGTAATATAGCAGTCCTCAACTTGACTGAGAGTTATTTGGTCAGAGTATGCCACCCAGGCTGGAAAAATAATGTTATTTATATGAGAAAACAGTCTAATTCATTGTACCTACTCTAGAGCCTGTTTTGAGTCTATATCTTGCTTTCAGTCAAGAATTTATATTTAAATCAAAGGCTAAATGAAGAGAAAAAGCTGGGTGGTTTTATTCATGTTTATTTATTATTATGCTTATTATTTTTTGCTTGCTCTTGAAATCAAAGCTTTTGAGTCTTGCTTTTAAATATTCACTTTTTTTTTTCTCATCATCTGATCATCTGTCTTTTAAAAGGTCTTTCATTAAAACCTTGAAAGGTTTGGTCCCTGTAGGGTGTAACAAATTACATTCTTTCAAAAACTAGAGGACATATAGCCTCTGCTCTTTGTGATTCCAGTCATATCTTAGAGGGTAGAGGAGAGGGGCAGATCCCCTGTCTCCTGCACGCAGCCCACACAGCCATGTACACAATTGGGTCTCAGTATTTGTCTGATAAACACTGTTTTTTTCTGCTGTTTGGTACCAGATTAGCCTTGTTGTTGTTCCCTCCTACTGGAAGAAAAGTTAAGCTGTAATCTCATTTATTTCATTACATATATTCATTGGTGCTGGGGAGTTGCACACAAACTGGTAGGTTGTTACTAAATTTGAGTCATTTTATCCCAGATGTTTCTTCCCAGGCCTTTCTGTTTCTTTTTTAATGCTAGCAAGGGTGTGGGAATCTGACCTGGCCTGGGAATCTGACCGTGTGTGATCCTTGGATGAGAACAGGAAGCCTGAGACACAAAATGGTCTTGTGACCAGGCACACTGCTTCTGAGGCCAAGCTGCCTGGGTCTATATCTAAACCTCTCACTTACTTGCTGGTGAGCTTAGGCAAATCGTTTAATCTCCCTGTGCCCCAGTTTTGCCATCTGTACAATGGGGGTGACAACATTACATGGTTTAGGGTTTGAGGGGATTAATTTAATTTATGCTTGTGAATCACTTAGAACAGTGACAGGCATAGAGTAAGCACTCAGTAAGGGTTAGGCATTATGGTCATGAACACTAAAATGTTTATTTATTTGGCTGTGCTGGGTCTTAGCTGTGGCACGTGGAATCTTTGACCTTTATTGCAGCATTGGGATCTAGTTCTCTGACCAAGGATTGAACCTGTGTCCCTGCACTGGGAACGCAGAGTCTTAACCACCAGACCACTAGGGAAGTCCTGGTCATGACCATCCTTATGGAAGGACGTGTCAGCTTTGATAGGGCAGAAATATCTTTCATATTCCATTACAACCTCTCTCCTGCATGCCTAAAGTTTCCGCAGTAGTTGGCAGGATGGGAGAAGTGGCTTCAAGCTCAGTGCTGTTGCTGCTCTGGTTTTCACTCTGCCTGAGCTTGACTCCCCCATTTACTAATTCCCCTCCCTAGAGTGGCTCTAAATATCCTAACTCCTTTCCTAGGAAAGAAACAAAGAAAGTTCAAATATTTTAGCAGCTGTTGTAAACCTGGCTATATTTCTGCCTCTGCTTCTTAATGATAAGATCACAGTTTCGGTGGTTTTGTAGTTTAGAGTATATTTCTTTGAGGGCTGAAATGTATTACTTTATGAAATGTTGTTAAATCATATTTGAAACAATGTTTCTGGAAAGAGAAATGCAGCAAGGGTGTCTACACTGTCAAGAAAGCCGCAAGTGTTCTCACATTAGCCTTGAGTGGAATGGAAGACCCTCTTACACTGAAGTCCTCCCCTACCTCCTAGCTGGGTCTGAAATTCCAGAGTTTTATATTTTTTAACTTAAATTTCGATTCTTGATTATATCTGACCATCCCTGGGAAGGGTAACACTTCTGTCAGTCAATTGCACTTTCCGCAAGTGCTGGTTCTGACGGGTAGACTCATGATGAGCTTTGTTTCCCGTTTGTCTCTAGAAAGAATAGCACTATGTTCCCCAATTTGTTTTATTTTGTAGTCATGAAGTGAACTAGCAGCTTTCCCTGGTCATGAGCACCGAAATTGGGCAGAGTCAAATTTCAAATTCATTTCCTTTTTTAGTTTAGTCATGTACAGAGAAGAAATAAATACTTGACTGTTCAGGACTTCCCTGGCGGTCCAGTGGTTAAGACTCCAAGCTTCCAGTGCATGGGAGGCAGGTTCAGTACCTGGTGGGGGAACTAAGATCCCATGTTGGACTCGGTACAACCAGAAAGATACATTAAAAACAAATACTTGGCTGTTTAGAAAATCCTAACTTTTTTCTCTTTCATCATAGCTGCACTGCTTACAAACTCGCTTTTGTTTTGGAGTAGAAATGTACAGGGAGATTGAACTGCACCTTGCACAGAATGGGCTAAGTAAAATGTTGCTTGAAAGACTAACCTGACGTTTTCAACTAAAATGAGTCTCCTCATCTTTCTTCCTTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTACAATCCGTGGGGTCGCAAAAGAGTCGGACATGACTGAGCACTTTCTTTTCACTTTTTTCTTCCTCATGTCTTCTTCCCCTGATGAATCCACTTCCTCTTTATTTTTCTGTGGCATTGGTGTTTCCCAGTTTTCTGCGCTCAGGACCTCAGAATGAGTCTTAGACGCGTCAGTCTTTGAAGCCCATCTGTTCTTCTGTGTCTCTTACCTCGGTATCCTTCCCCCACACTCAAGGCCCAGTCTAAGTCAGACCTCGGTACTTTGCACCTGGGCCAGTACCTCTCTCTTTCTGACTCTTGCCCTTCTATTTCTGTAGTCCCTCTCTTCCTCTGTTTAAAATGTCCTGCTGAATTAATTGTATGTTTCTTAGTCGGGCATGAGGATCTTTTGCTGTGTGGCTTCAATTTACCACATCAGCTTTAATTCCCACACGACAGCCCCAGGAGTGCCACCTGCCTGCTCAAGTGCTGGGGATCAATCCGGGCTGCATGACATTGTCCAGTGAGTCTTTGTGTTCCCCTTTCCCTCCGCTTCAGATGGCTTTCTCTTATCTCTACCTGCCGAAGGCCACCTACCAAGGCCCAGGTCAAATTCTGCCTGCCAAATTCTGTGATTCCCCTAGACCAAGCAATGTCTCCTTGCTCTGAACACTCACAGGAGTTCTCTACCCTGCATTCTAATTATTTGTATTAATGTCTCACCCCTCCCTTAAAAAAAAAACTGAGGAAGCCTTAAAAATTTTTTTTCCTATCCTTTGTAACTCCTGGGACAATGCCTTGTGTCTAACGTCCATTTTAACAAAAGCAATAATAAACAGTCCAATATTCACTGCAAAACCAAAAGACCAATCTGAAGATGTGATTTTAATTTAACACACAG
Seq C2 exon
GCGTAGGAAATGCTACTGCCTGTGTCTTACATGAAGTTATCTACGTCATTGGCGGCCACTGCGGATACAGAGGCAGCTGCACCTATGACAAGGTCCAGAGCTACAATTCAGATATCAATGAATGGAGTCTCATCACCTCCAGTCCACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001093:ENSBTAT00000001447:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.6),PF0134420=Kelch_1=WD(100=11.4)
A:
NA
C2:
PF0134420=Kelch_1=WD(100=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]