GgaINT0047966 @ galGal3
Intron Retention
Gene
ENSGALG00000020737 | KLHL23
Description
NA
Coordinates
chr7:20049571-20052403:-
Coord C1 exon
chr7:20051191-20052403
Coord A exon
chr7:20049724-20051190
Coord C2 exon
chr7:20049571-20049723
Length
1467 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GTGACTGTTGTACTGTGCAGGTG
3' ss Score
8.3
Exon sequences
Seq C1 exon
ATGGCCCTGCCTGGGCAGGAGGACTACGTGTTCGCCTACCGCGACTCATCGCACCCTGTGTGCCTGCTGGACGCGTTCCGGGCGTTCTACCTAGACGGGCTATTCACTGACATCGCGCTTCAGGCCGCCTCGGGAGTCCTGCTGCATTGCCACAGAGCCGTCCTGGCGGCTTGCAGCAGTTATTTCAGAGCCATGTTCACAGCCGATATGAAAGAGAAATCTAAAAACCAGATCAGGCTTCCTGAGCTCAGCCACGCCGTGCTGGAAGCCCTCGTGAATTATGCGTACACCTCCCAGATCCAAATAACAAAGAGAAACGTGCAAAGCCTCCTGCAGGCGGCTGATCTCCTCCAGTTTGTCTCAGTCAAGAGAGCCTGTGAGCAGTTTCTGATCAGGCACCTGGATGCTGACAACTGCCTCGGGATGCACGCCTTTGCTGAGCACCACAATTGTCTGGAACTGGAAAAGGAGTCCCGGAGGATGTTGCTGTGGCAGTTCGAAGAAGTGTGGAAGCAGGAGGAGTTCCTGGATGTTAGCAAGGAGAAGTTGGCTTTCATCCTCTCCAGAGAGAACCTCAATGTCTGGAAAGAAGAGGCAGCTGTCGGAGCTGTCGTTAGGTGGGTTGCACACAATGTAGAGGAAAGAATTGAAGACATCTATGAACTGCTGAGCTGCATCAAACTAGACCTAGATAATGTGTATTTGAGGTCAGCTTTAAGCCTGCAAAAAAAATGCCGACTTAATGATAATAAGATAAGGTCCCTTGTGTACAGTGCCCTAAACCCCAGTCCCAAAGGCCTTTCCAAAAGACCAACGGCCACCATGTGTGTGGTTGGAGGATATTATTGGCATCCCTTATCAGAAGTGCACGTTTGGGATCCTTTAACTAACGCGTGGCTCCAGGGAGCAGAAATGCCGGATCATACCCGAGAGAGCTACGGGGTCACGAGCCTGGGGCCAGACATATATGTGACAGGAGGCTACAGAACGGAGAGCATTGAAGCCCTGGATACCGTGTGGATATATAACAGTGAGCGGGATGAGTGGGCAGAGGGCTGCCCCATGCTTGATGCAAGATACTACCACTGTGCGGTGTCCCTGAGCGGCTGCGTCTACGCACTGGGTGGCTACCGGAAGGGAGCTCCGGTGCAAGAAGCTGAGTTCTATGATCCTTTGAAAAAGAAATGGGTTCCTATTGCAAACATGATCAAAG
Seq A exon
GTACGTAAGCTCTCGTGTGGCATCAGCCTCAGTGTCAGTCTTCTCACGTTTGCCACTGAGAAGTGCCACAGACACATTCATGGCTAGAGCCTAGTCGAGCTCAGAGGGATCACCCCAGTGATGTCAGGAGGCTTTGGTTCAGGTCCGTGTGGGCCAAACCGCTACAAACACCCAATGGCTGCACTTGGCTGTGCCGTTGGGCACAGAGTGAACAAGCAATGGCAGTGTCATTTACGTCTGTCTTCCTTCAGGAGGTAAATTTCTATTTGAATTGGAAAGAAGTTAGAAAACTACCTGGGATTAGAGTCTGTTCAGCAGGTCCTCAAAAACTGAGCTTCAGTAAAGGCATTGTATTATTCTGGTATGAGGCCTGATTGTTTTCTGTACAGTTTATTTATAAGCGTGTCTTCATTTAAGACATCTTGCATGCAGCTTTCTCATATTCCAGTGTATCATCTGTTCAGGATCCTTAGTTAAATCTTTGGAGCGTGGATAGTGAAAAGCACAGATACCTATTTTTAGCAGCCAAAATAGTGACCTACTGAAAATACAAGCGCTTGGAGAACAACCTAACTAAAGGATATTGTTTTGTTCTGAAGCTTATAAATGATCATACATCTTATACATTTTTACAACTTAATGGAATTATTTACTATTAGTTATAAAATATTTTAGAAGATTTTATTGTAAATTGTTGCAAAGTAATTTTTTTCAGAGATTTTGAGGTGTTTAACAGGAGAAAAACACTAATTGTGCTCATGCCACTGTTTTCTACAATGTTCACATATTTCCTACAAATACTACTATTTGTCATTTTTAATTTAGAAATATGAATGCTACACTAATACTGCGAGCAGATATTTGGGCCCATTTTCTGTGTGAAGCTTTTCAGAGGCTTAGAAACGCACCAACGTGCCAGTTTTTGTCCGTCTTATCTTGCAGCGCCGTTGTTTTATTTTTGTTTTGTTCTCCCAGAGACAGAGCTATCACAGCTACATTCCATTTGTGTCCTTCTTTGTATAATAGCATTGCTAATAATATGAGAAAGACTAAAAATATCAGCAAAAAGACCCTGAGACGCTGAGTAATCTCAGCTTCCATTGACTTTGTCCTTGCCACATATGTGACACTTAAAAATGAGTTAAACATAGTAGAAGTAATTCCCTGTTCCAAAGCCAGTGTTACTGTGTCCATAAGGACTGCATAAAAATAGTGATTTTTTTTTTGTGGCCATGTTACGTGCAATACATGTCAGCTACTGCAATTTTATTTAATTGTTCATGACTTATCCTGCTAAAATAAGGTGTCTTGTCAGTTTATTTAATTTCACATTCATTTAAATACCTGCAAGCATAATTTCATCCTAAAACACTAATTAACAAGCTGTTAAAATTGGGGTTACCGATGGAAGTGCCGTTGGGTGCTGTGTGTGGTCTGAAGGTGTGTTGTGACTGTTGTACTGTGCAG
Seq C2 exon
GTGTTGGGAACGCCACCGCCTGTGTCCTGCATGAAGTCATCTTCGTAACCGGCGGTCACTACGGCTACAGGGGAAGCTGCACCTACGATAAGATCCAGAGATACCATTCGGGTAGCAACGAGTGGAGCATCGTCACCACAAGCCCACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020737:ENSGALT00000015791:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF134181=Kelch_4=WD(100=9.4),PF0134420=Kelch_1=WD(100=11.9),PF0134420=Kelch_1=WD(100=11.4)
A:
NA
C2:
PF0134420=Kelch_1=WD(100=90.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGATACCGTGTGGATA
R:
GATGCTCCACTCGTTGCTACC
Band lengths:
342-1809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]