BtaINT0082794 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15326026-15326772:+
Coord C1 exon
chr27:15326026-15326118
Coord A exon
chr27:15326119-15326713
Coord C2 exon
chr27:15326714-15326772
Length
595 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CCTGTTGCTTTCTCTTTTAGGAT
3' ss Score
13.91
Exon sequences
Seq C1 exon
CAGAGCCCTGTCGGGAAAGCTTGAAGACTGGCCATTTTTCAATGGCAAGAGACACCCTCAGCTCCAGAACCACGGAAGCAATTGTGCTTTCAG
Seq A exon
GTAGAGGATTTCTATTATTCTGATTGCTTCCAAATAGGTGTTTTTTTTTTTTTCCATTAAGCATTGTTTTTACTTTATAAAGCAACTATTAGTTGACATTCTAATTTCCTGTGTATTTAGAGAATGTAGAAGGAACTGATGCTCTTATATGTGGAAACATAAGAGTAAGATATTTTTCAATCAAAGAGAACATTGATTAAAAAGTTTAAAACGGGCTTGAATATTTGGAATATCTATCCTTAGGGATTTTGGACAGATACCATTACCATGGTTTACAGTAATTTTCCTTTTGCTCAAATCAAGAGGTTTCACAAATGTTTAATTTCCCTCTACCATTCCCTTCGCATAATTGCTAAGAACATAGGTACCAAATGGACAATAAACACAAGAGTAATCTAGAGGTCTCAATTTGTATCTCATGCCAAGTCCTTGAGCGTAAAATGTTCAGAAAACCATTGCCTTCTATACTGATAATTGTGTGCTTAGATTTGCTATCCAGACATTTACAAGAAAATCTGTATTACCTTAAATTAAGATTCGTGTTAAATATGATCTATAAACAGTAGAGTTATGTGCCTGTTGCTTTCTCTTTTAG
Seq C2 exon
GATGATTGCACTCAGGCAAGCAGCTTACTTCATTTGCCTGTTTGCTACAGTTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002421=PAN_1=PU(1.2=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]