MmuINT0088118 @ mm9
Intron Retention
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46379428-46380189:-
Coord C1 exon
chr8:46380096-46380189
Coord A exon
chr8:46379487-46380095
Coord C2 exon
chr8:46379428-46379486
Length
609 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TATATTTTTTTCTTTCAAAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
AGACCGCCCTCGGTGCCATATTCAGAGGGCTTGAAGACCATCTTCATGTGAAGACTCCCTCTCCTCCAGAACCACAACGTGACCATCCTTCCAG
Seq A exon
GTAGCTGCTTTCTACCGGTCTTGTTATTTCCTGTGTCTTGGGTTTTTTTTTTTCAATATAACTATTTCTGCATGAACAAAAGCTCACTGGTATAATGCACTAATTTCCTGAGTTTTTAGAAAATCTACAAGGAGTTGTTTTTCTTTCTATACAAATATATTAATGTAAAATATTTTAAAACCAAGAATAAGTTTTTGATTCTTTTCAAAGATGTCCTTTCTGTGAAGGTTGTGGGTGATATTATTGTCCTTATTCATAATAATTTTGCATTAATCTGGAAATTTAATAAGTGTTTTTAATTATTTGTATTAACTCTTTACAAAATTATTAGAAATAAATCTTCAAAATTAACAATAAATACACTAATACACACTGATAGTAATCTAGAGGTCTCAATTTGGATCTTGGGAAGCATGATAAATATTTTAATTTTCTATATACAAAATATCCCACAGCCAAATCTTCCTTCTCCTGGTGATTATGTGCTGTGATTTGCAACTTAGACATTTATCAAAAAGGTGAAGTCTACATGAAGTTAAATTGTCTATTAAATACATGGTAAACATGATCTCAACCTAGTAGTTATATGTATATTTTTTTCTTTCAAAG
Seq C2 exon
GATGATTTTATTCAACCGAGTGGGTTATTTTGTTTCCTTGTTTGCTACCGTCTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-Klkb1:NM_008455:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002421=PAN_1=PU(1.2=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: