HsaINT0088898 @ hg38
Intron Retention
Gene
ENSG00000164344 | KLKB1
Description
kallikrein B1 [Source:HGNC Symbol;Acc:HGNC:6371]
Coordinates
chr4:186227402-186228253:+
Coord C1 exon
chr4:186227402-186227587
Coord A exon
chr4:186227588-186228194
Coord C2 exon
chr4:186228195-186228253
Length
607 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TGTATTGTTTTCTTTTTTAGAAT
3' ss Score
11.48
Exon sequences
Seq C1 exon
CTGAACACGGATAGGATGTTCATGGAATATGTTGACAGGACAAAAAGTTGAAACTGTTGGCAGAAACCCAAAGTCAATATTGAAGCCAAGCAAAATATTGCCTGCAGTGCCACATTAGAACAGCTTGAAGACCGTTCATTTTTAAGTGACAAGAGACTCACCTCCAAGAAGCAATTGTGTTTTCAG
Seq A exon
GTAGCAAATTTTTATTATTCTGATTGTTTCCAAATAAACTATAATTTTTAAGTATAATTTTTTACTTTATGAGAAAATTAATCATTTATATTCTAATTTCCTGAGTATGTAGAGAGTATAGATAATGTTCCTTTATGTAGAAATATTTAAATGTAAGATGATTTTAAATCAGAAAGAATATTTGATTGATTTAAAATTTTTAAATGGGCTTTAATATTTTCAGAGGTTTTCTTTACTTAGGGATTTTTGGACTGACATTATTGCCATTATTTATTAATTTTGTTTTTGCCCAAATCAAGAGGTTTCATAATTGTTTACTCTCTCTCTACCAATTCCCTTTCCAACATTACTAGCCACAGAGTTGGCCAATGAACAATAAACACAACAGTAGTCTGGAGGTCTCAATTTGTATCTTGGGAAGCATTATAAATTTTCCAACTCCCTAGACACAAATGTACCAAAAAAAAACCCTTGTTTTCTATACCAGTAATTGTGTGCTTTGTCTTGCAATTCAGACATTTACAAGAAAATCTAAATCACCTTAAATTAAGATTTATGTTAAATGTGGTCTAAAACCAGCAGAGTTATGTATTGTTTTCTTTTTTAG
Seq C2 exon
AATGATTTTATTCAAGCAAGCAACTTATTTCATTTCCTTGTTTGCTACAGTTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164344:ENST00000264690:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002421=PAN_1=PU(1.2=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGATAGGATGTTCATGGA
R:
AGGAAACTGTAGCAAACAAGGA
Band lengths:
238-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development