RnoINT0080215 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50152008-50152796:+
Coord C1 exon
chr16:50152008-50152124
Coord A exon
chr16:50152125-50152737
Coord C2 exon
chr16:50152738-50152796
Length
613 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TTTATTTTTTTCTTTCAAAGGAT
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTGTCAACACTGGAGCCAAGCAGAGACCAACCTCAGTGCCATATTCGGAGAGCTTGAAGACTAGCTTCATGTGAAGACTCCTTCTCCTCCAGCAGCACAAAGCAACCATCCTTCCAG
Seq A exon
GTAGCTACTCTCCACCATTCTCATTGTAGCCTATGTCTTAGGAATTTATTTTTTTAAAAAAGTATAACTATATCTGCATGAAAAAGTCTATTGGTGTAATGCACTAATTTCCTGAGGGTTTAGAAAATCTACAAGGAATTGTTTTTCTTTGTACAGCTATATTAATGTAAAATATTTTAAAGCCAAGGATAAGCTTTTGATTCTTTTCAAAGATGCTCTTTATGTGGGGGTTGTGGGTGATATTATTGTACTCATTCATAATAATTTTGCATAAATCTAGAAATTTAATAAGTGTTTAATTATTTGTATCAACTCTCTTTACAAAATTAATAGAAATAATTCTTCAAAATTAACAATAAATACACTAATACACACTAATTGTAGTCTAGAGGTCTCAATTTGTATCTTGGGGAGCATGATAAATATTTTAATTTTCTATATCCAAAATGTCCCCTCCTCCAAATCCTCTTTCTCCTGGTGATTATGTGTTGTGATTTGCAATTTAGACATTTACCAAAAAGGTGAAGTGTACATTAAATTAAATTGTCTATTAAATACATGGTAAACATGATCTCAACCTAGTAGTAGCTAAATTTATTTTTTTCTTTCAAAG
Seq C2 exon
GATGATTTTATTCAAACAAGTGGGTTATTTTGTTTCCTTGTTCGCTACAGTTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002421=PAN_1=PU(1.2=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]