BtaINT0082806 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15340117-15340531:+
Coord C1 exon
chr27:15340117-15340226
Coord A exon
chr27:15340227-15340362
Coord C2 exon
chr27:15340363-15340531
Length
136 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
CGTTTTTACATTTGTCATAGGCA
3' ss Score
7.45
Exon sequences
Seq C1 exon
AAATGTTTGTTTCCTTAAGACTTCCCAAAGTGGGAGCCCGAGTTCCCCTACTCCTCAGGAAAATGCCATCTCTGGATACAGCCTTCTAACCTGCAAACAAACTCTGCCTG
Seq A exon
GTAATGCGATTTGATAAAAAAATATTACACAAAATGTGATACATTCTATGATCTTCTAACAAGCCTCAGTGTTCCAGAAACTTGTGTATGTGTGGCTTATCATTTGCATTTTCTATCGTTTTTACATTTGTCATAG
Seq C2 exon
GCACAGAGCCCTGCCACTCCAAAATTTACCCGCAAGTTGCTTTCGAAGGAGAAGAGCTGCATGTGACCTTCGTGAAAGGAGTGGATGGTTGCCAAGAGACCTGTACAAAGATGATTCGCTGTCAGTTTTTTACTTATTCTTTATTCCCAGAAGACTGTAGAGGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.9=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTTCCCCTACTCCTCAG
R:
TTCTCTCCTCTACAGTCTTCTGGG
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]