MmuINT0088130 @ mm9
Intron Retention
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46361604-46362438:-
Coord C1 exon
chr8:46362329-46362438
Coord A exon
chr8:46361767-46362328
Coord C2 exon
chr8:46361604-46361766
Length
562 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
GATATTTGTGTATGGTGCAGAAC
3' ss Score
5.62
Exon sequences
Seq C1 exon
AAATGTTTGTTTTCTTAAGACGTCTAAAAGTGGAAGACCAAGTCCCCCTATTCCTCAAGAAAACGCTATATCTGGATATAGTCTCCTCACCTGCAGAAAAACTCGCCCTG
Seq A exon
GTAATGACTCAATCTTAGTGGCACATGGCATGTGTCCGGGTTTGGTTCTTGGTTGCTTGATAAATACTATGACCAAAAGCAAGTTGGGAGAGAAAGGAGTTTGTTTTGTTCACATGTCCCAGTCATAGCTGATTCCTGAGGGAAGTCAGGCTAGAAACTCAAGCAGAAGCAGAGGCAGGGACTGGGCAGAGACCATGGAGAAATGTTGCTTCTTAGCTTGCTTCTGTGAATATATATATATATATATATATATTCATGCTACCTGCCCAGAATTGACACTGACCTGGTTAGACGGACCCTCTTCCATCCATCATTAATCCAAAGAACATCCCACAGACATGCCTATAAGTTAGTCTGAGGAAGACGATTCTCAGACTGATGGTCCATCTTTTCAGGTGACTCTATTTTGTATCAAGTTGACAAACACTAACAGCCACATGGTGCAGCACATCTTGGGGTCCTCTAAGAGTTAATGAAATGGTTCTCACGACTCTAGAAACTTTGCCAATGTGACTCGTTTCCTGACTTGTGATATATCCTTTGATATTTGTGTATGGTGCAG
Seq C2 exon
AACCCTGCCATTCCAAAATTTACTCTGGAGTTGACTTTGAAGGGGAAGAACTGAATGTGACCTTCGTGCAAGGAGCAGATGTCTGCCAAGAGACTTGTACAAAGACAATCCGCTGCCAGTTTTTTATTTACTCCTTACTCCCCCAAGACTGCAAGGAGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-Klkb1:NM_008455:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.9=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTAAGACGTCTAAAAGTGGAAGA
R:
CCCTCCTCCTTGCAGTCTTGG
Band lengths:
262-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: