GgaINT0068413 @ galGal4
Intron Retention
Description
NA
Coordinates
chr4:60993496-60993852:+
Coord C1 exon
chr4:60993496-60993605
Coord A exon
chr4:60993606-60993692
Coord C2 exon
chr4:60993693-60993852
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
GAACACGCTCATTCTTACAGCCT
3' ss Score
5.58
Exon sequences
Seq C1 exon
AAATCTTTGCCTCCTGAAAACATCAAGAAGTGGAATACCAGAGGCACTTACGTTACGAGAAAATGCTATTTCAGGTTTTGGTCTCCTAAATTGCAGAAGACACTTTCCTG
Seq A exon
GTAAAAAGTAAATTACAATAAAATTCAACTCTTGCATTAATGAAATGAATAGATCTACTGATGCTTGGAACACGCTCATTCTTACAG
Seq C2 exon
CCTGCAATTCTCGCACTTACGTGCATATGAATTTTCTGGGAGATGAACTCAATGTCACTTATACTAAAGGACACAGAGCTTGTCAGCAGGTTTGCACAGACATGATCCGCTGCCAATTTTTTACCTACTTTCCCCTCCAAGAGGCATGCAATGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571:ENSGALT00000037595:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.2=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGCACTTACGTTACGA
R:
GCGGATCATGTCTGTGCAAAC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]