MmuINT0060083 @ mm10
Intron Retention
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45248744-45249120:-
Coord C1 exon
chr8:45249011-45249120
Coord A exon
chr8:45248907-45249010
Coord C2 exon
chr8:45248744-45248906
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GCGTGTGCTTTGTTGTCTAGTAT
3' ss Score
5.52
Exon sequences
Seq C1 exon
ACATCTTTGTCTCCTTAAAACCTCTGAAAGTGGATTACCAAGCACACGCATTACAAAGAGCCACGCCCTTTCGGGCTTCAGTCTCCAGCACTGCAGGCACAGTGTCCCAG
Seq A exon
GTAAACAATGCAGGCTGTCCCTCTCTCTGAGCTCCACAGCCCCAAGGAACTGGATGGCTGTGAAGGCTACACACTTCAAACCTGGCGTGTGCTTTGTTGTCTAG
Seq C2 exon
TATTCTGCCATCCGTCCTTTTACAACGACACTGATTTCTTGGGAGAAGAGCTGGACATCGTCGATGTGAAAGGCCAAGAAACCTGTCAGAAAACGTGTACCAATAACGCCCGCTGCCAGTTCTTTACCTACTATCCATCGCACAGACTGTGCAATGAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645:ENSMUST00000034064:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(60.5=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTACCAAGCACACGCAT
R:
TCCTCTCATTGCACAGTCTGT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types