HsaINT0059109 @ hg38
Intron Retention
Gene
ENSG00000088926 | F11
Description
coagulation factor XI [Source:HGNC Symbol;Acc:HGNC:3529]
Coordinates
chr4:186280012-186280385:+
Coord C1 exon
chr4:186280012-186280121
Coord A exon
chr4:186280122-186280222
Coord C2 exon
chr4:186280223-186280385
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
ACATGTGGTCTGCTGTCTAGTGT
3' ss Score
4.81
Exon sequences
Seq C1 exon
AAATCTTTGTCTCCTTAAAACATCTGAGAGTGGATTGCCCAGTACACGCATTAAAAAGAGCAAAGCTCTTTCTGGTTTCAGTCTACAAAGCTGCAGGCACAGCATCCCAG
Seq A exon
GTAAACTGAGAGTTCTGCATTCTGGCTGAGAGTGACCAGCCCCGAGGAGGCTGATACATGCTGAGGGAGGGTCTCACTCTGACATGTGGTCTGCTGTCTAG
Seq C2 exon
TGTTCTGCCATTCTTCATTTTACCATGACACTGATTTCTTGGGAGAAGAACTGGATATTGTTGCTGCAAAAAGTCACGAGGCCTGCCAGAAACTGTGCACCAATGCCGTCCGCTGCCAGTTTTTTACCTATACCCCAGCCCAAGCATCCTGCAACGAAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088926:ENST00000403665:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF142951=PAN_4=PU(86.3=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGCCCAGTACACGCATT
R:
TTCCCTTCGTTGCAGGATGC
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development