RnoINT0057459 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50195214-50195590:+
Coord C1 exon
chr16:50195214-50195323
Coord A exon
chr16:50195324-50195427
Coord C2 exon
chr16:50195428-50195590
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GCATGTGCTTTGTTGTCTAGTAT
3' ss Score
4.95
Exon sequences
Seq C1 exon
ACATCTTTGCCTCCTTAAAACATCTGAAAGCGGATTTCCAAGCACACGCATCACAAAGAGCAACGCCCTTTCCGGGTTCAGTCTCCAGCACTGCAGGCACAGCATCCCAG
Seq A exon
GTAAACCTCGAAGGCTCTCCTTCTCCTTGAGCTCAGCAGTCCTGAGGAACCAGGCGACTGCAAAGGCTACACATTTCAAACCTGGCATGTGCTTTGTTGTCTAG
Seq C2 exon
TATTCTGTCATCCGAACTTTTACAACGACACTGATTTCTTGGGAGAAGAACTGGACATCGTCGATGTGAAAGGCAAAGAATCCTGCCAGAAAATGTGCTCTGACAACGTCCGCTGCCAGTTCTTTACCTATTATCCCTCTCGAGGATCTTGCAGTGAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(71.2=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGGATTTCCAAGCACAC
R:
CCTCTCACTGCAAGATCCTCG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]