BtaINT0084423 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65743798-65747341:+
Coord C1 exon
chr16:65743798-65743987
Coord A exon
chr16:65743988-65747228
Coord C2 exon
chr16:65747229-65747341
Length
3241 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTGGTTTTAAATCATGCAGATT
3' ss Score
5.68
Exon sequences
Seq C1 exon
CCAAATTTCTTGGGAATCAACAGGTGAGCTATGGGCAGAGCCTGTCTTTTGACTACCGTGTGGACAGGGGAGGCAGACACCCATCTGCCCATGACGTGATTCTGGAAGGTGCTGGTCTACAGATCACAGCTCCCTTGATGCCGCGTGACAAGACACTGCCTTGTGGGATCACCAAGACTTACACATTCAG
Seq A exon
GTAAAGAGAGAGACTGCAAGTAAGTCAAATAGAGCAAACGGTGTTTGAAGTCTGATTCCTTTGTTTATTCATTCAGTGATCATTCATTTATTCAACAAGCGTTTCTGAGCACCTTTATGGACCAAATATGGTGTTATGTGCTGAGACAGGTCATGACTGCTGCCCACCAGTCCCTGACAGGCTAATGGGGGAGAAAAATAAACTGATCATTGCAGCGCAGCTTGTAAGAGACAAAGTGGACACCAGTGTTCTGAATACATGCAGGAGGCATCAGTAACTTGCATTGGAGTGATGATCTAGGAAAGCTTACTGAGAAGATGTGACAATGAAGAGTAGCTTTCTAAGGAAAGAAAAGGAGTGAAGGTTACCATGGCAGAAAAAGTATGTTTGAGGAAGTTTTGTACATTTAGGAAATTCTAAGTGATTAGGCATGAGTGGAACATGGAACAGGGGAGAGGAATACAGTGAGAAGTGAGGTCAGAGAAGAGGCGGAGGTGAGGTCATGGATGGTCCTGTGTGTGTCTAAGGAAGTTACATGTTATCCTGTGAAATGGGAGATTTTTTGAAGTATGATTGACCTACAACACTATGTTAGTTCCAGGTCCATAACATAGTGATTCAATGTTTCTATACATTACAAAGTGATCACGACAATTCTAGTTACCACCTGGCCCTATACAGTGCTAGTAGATTCTTGACTGTGTTTCCCAGGCTGTACATTTCATCCTTGTGGTTCATTTATTTTATAACTGGAAGTTTTTACCTTTTAATCTCTCTCACCGTTCACTCACCCCCCACACCCTCCCTTCTTATGACTCTGTTTTTGTTTCATTATGTTTGTTTTTTAGATTTTACATGTAAATGAAATCATATTACATTTGTCTTTCTCTGTCTGAATTCTTTCACTTAGCATAACACCCTCTAGGTCCATCCATGTGGCTGCAAATGGCAAGAATTCATTCTTTTTATGGCTGAGTAATATTCCATCACACACACACACACACTCCACATCTTCTGTATCTTCTATTGATGGACATTTTCCATATCTTGGCTATTGTGAATAATGTTGTAGTGAACATATAGGTGTATTTCTCTTTGAATTGGTGTTCTTGTTTCTTTCAGAAGAATACCCAGAAGTGGACTTGCTGGATCATATAGTAGTTCTATTTTTAATCTTTTTGAGGAACCTCCACACTGGTTTCCATAGCACCTGAACCAATTTACACTCCCACCAACAGTGCACAAACATTCCCTTTTCTCCACATCCTTGCCAACACTTGTTATTTGTTGTCTTTTTGATAATAGCCATTCTGACAGGTGTGGGATGATATCTCATCGTGGTTTTGGTTTGCATTTCTTTGATGATTAGTGATGTTGAGCATCTTTTCATGTGCCTGTTGCCCATCTGTATTCCTTCTTTGGAAAACTGTTTATTTAGGTCCTCTGCCCATATTTTAATTGGGCTGTTTATTTTTTTGATGTTGAGTAGTTGTGTAACTTATTTGTATATTTTGGATAATAATCCCTTATCAAGTACATCACTTGCAAATATTTCTCTCTAGTACGGGAATTTTGAATGGTGGGTACAGAGAGTTCAGGGGAGGGGATGTGCCTATCACATGCTTAATAGTGTATCAGAGGCTAAGAATTCAAGATGAAGAAACATGGTCTTTGTCTTCTAAGAGCTCTTGTCTTGTAGAGCATGTTATTATTTGTGCCAACATAATACAGTATAAAGTCACTTCAGTGGTGGTGCATGCTCATGGGGACTTGGGAGGAAAGGAAGGAGTGGCTTAGTTCTGTCTGAAGAAGTCAGGAAAAGCTTCACTAGGAGAACTGTGTGGACTGAGAACAGAAATAAGCACCAGGCTTTGCCAGGGACAAATCAGGACAACCTGCATGTGTGAGTATATGTGGGAATGCACAGGTATAGTATAGGGCATTGGTGAGCAGTAGTTACGGCTGGAACACAGCTAGTACAGGGCAGAGGGGCAGATAAAGTTAAAAGGGCTGGGAAGAGACCCAGCATGGTGGTTCTTGGACGTCATGTCCAGGTGCTGAGATCTGGCCCATGCCTGCAAGATGATGGAAATCTATTGAGAGATTAGAAGTAGAGGAGCGACGTGATCAGATGTGGAGGCTGGGTGCAAATCCTGTGTGGAGGACAGTTTGGGTAGAGTCTTTAACTGAACCATCGGATCACATTCACAGTGGTTCAGATGAAGGTTGTTGGGGGCCTACCCCAGGGTAGAACTAAAGGCAATAATGTATAGAAGACCCACAACACACACTGTGTTCTTCAGTAACCAACTGCCGCTTATTCTGATGCACACACTTAGCTCTCCATGCTGGAACACCCATTCCCACAGTCTCAGCTTGGTGAACTACTCTTTGAGATTCAGCTTACAGGTTTTCCCTTTGTATTTGCCTTCTCAGAACCCCAGGTAAAGTTACAGTCCATCGTGAATTTCTGTGGCATGCTGTTCACGCATCTGTTATAGCACTCTCTGCATTGTATCATAATTACACGTTTACCCACCACCTTGGGTAGACATTGATCACCTCACTCTACTTGTCTTTGTATTCTCTGTCCTAACACAGCTTCTAGCTCAAAACAAGTGCACAGTAAATACTTATTTCATGAATCAGTGGATGAGGCAAAAGGGTTAGGGTTGTTCCTGGAAGAGCTATTCCAGTAAAAACCAAAAAACATTAAAATAAAAAAATGGTACAGGGGCTGGTGATGTGATACACCGAGGCAACACGATGCCAAAACTAAGAAGTATTAGATGTGGACAGTGTGAAAGGTGGACACTGGCTTGTGAGAAGAGGAGGTGAAACATGCTCAGATAACAAATCATTTAAACAACAAAACCAAACATGAATGACAGCTCTTAAAAATCAGAGCTTCTGGACTCAGAGATGTTCCTGCTATTAGGTTTCGTGTGACTAAGAATAGAAAGTGGTCTCTGAGGACTTGGACCCACACTGGATGCCGTAACCCCTGGAGTTCAGCTTCCTACACTCCATCACATCCTGTGGGGCTTGCATTGCCCACGGAGTGGGAAAGCTCCAGGCTTGTGCCTACAGGGATATGGCTCCCTGTCCTTTATCCCCCTCTAAGCAGGGCTGTGAAGGGGCGTAGTTGTTCCTGCACTCTCGGGCATAATTGAATCAGGTATACACATTATAAGATTTGATAAGAGTTGGATTTTTCACCTTTTGGTTTTAAATCATGCAG
Seq C2 exon
ATTAAATGAACATCCAAGCAGTAATTGGAGACCCAAGCTGAGTTACTTTGAGTATCGGAGGTTACTGCGGAACCTCACAGCCCTGAGGATCCGAGCTACCTACGGAGAATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793:ENSBTAT00000061289:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(48.1=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(29.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development