Special

GgaINT0036784 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr8:7848452-7849070:+
Coord C1 exon
chr8:7848452-7848641
Coord A exon
chr8:7848642-7848957
Coord C2 exon
chr8:7848958-7849070
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
CCACCTGTCCCCATGTGCAGGTT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CCAAATTCCTCGGGAACCAACAGCTGAGCTATGGCCAGACGCTCTCCTTCGATTACCGCCTGGACCGAGGGGGACGGCTGCCTTCTCCGCATGACGTGATCCTGGAAGGAGGTGGTCTCCGAGTCACTGCCCCCTTCTTACCCTCTGGGAAGGTCCTGCCCTGTGGTGTCAGCCAGACCTACACCTTCAG
Seq A exon
GTGACGGGGTGCTTGGGATTGTGGAAAGAGAGTCTTTGTGAGCTTGTGGATTCAGTGATTGTCCCTCAGAGGTGGTCAGGCTCAAATACCTGCCTCATTTGGACCCGGGTTCAGCCTGCGTGCTTCTCTCCCGATGGACAAGGAGAGGACAAGAGGGATTGTAGAAGATCTGCTTTGGGGCTGGGATTGGTGCTGTGCTTGGTACAAGTTGTGTGGGAGGAGGGTGCTAGCGCTTTGGACTCAGGAGGGAGAAGGGAGAGAGCAGCTGGGACATCCCATGTTCCTGAACACTGCTCCCACCTGTCCCCATGTGCAG
Seq C2 exon
GTTGGATGAGCACCCAAGCAGCAAGTGGAGCCCCAGGCTGAACTACTTTGAATACCGCAGGCTGCTGGGAAACCTGACAGCCCTCTGGATCCGAGCCACCTTCGGGGAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004627:ENSGALT00000007372:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0005213=Laminin_B=FE(48.1=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(29.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAACAGCTGAGCTATGGC
R:
GAAGGTGGCTCGGATCCAGAG
Band lengths:
279-595
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]