RnoINT0084206 @ rn6
Intron Retention
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70590052-70593526:-
Coord C1 exon
chr13:70593337-70593526
Coord A exon
chr13:70590165-70593336
Coord C2 exon
chr13:70590052-70590164
Length
3172 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AAAAATGTTCAATTATGCAGATT
3' ss Score
4.74
Exon sequences
Seq C1 exon
CCAAATTTCTCGGTAATCAGCAAGTGAGTTACGGGCAGAGCCTGTCTTTTGACTACCGCGTGGACAGAGGAGGTCGACACCCATCTGCCTATGATGTGATCCTGGAAGGTGCTGGTCTACAGATCAGAGCTCCTCTGATGCCACCAGGCAAGACACTTCCCTGTGGGATCACAAAGACTTACACGTTCAG
Seq A exon
GTAAGAAGCACATCAACCAACCCGGGGCCGTGTTGTTTTCTTCATGGGTTCATCCCAGCACGCATGCAGCCAGTAGGCTTTTCTGAGCCATATGGTGTTACATGCAGAAACAGGACACTATTCCTTCCCTGCAGTAGCTGGCAGGTTCACGGGCATGGGAAGAAGATGATATACAGCCAATTGGCTGACTGAGATAACATGGCGGACACAGGTATTCTGAAGACACATAGAGGTACAGCTGCACTAGGGTGATGGAGAGACTTGTCCCGAGAGGGTGAGGCAGTGTGGAAGGCGGTCTTGATGGAAAGGAAGAGGATGAGGTCAGCGGGCAGAGGAAATGTACTTGGAATCACGGATAGTTGAATTCCAGTGGAACAAGAAGTGGGGTGAAGACAATGTGGGGGGTCATTGAGGTCAGAGGAACTGCTGTAAGTGACATTGCAGAGCCCAGGTACATCCAAGAGAAAGTGGCTTTGGAATGACGAGTTCAGAGAGGCAGGGGAGGGAAGCTTGCCCCCTCGGAGCTCTGTACTTTGTTAGAGGTTAAGAAAGATGGGATAGGACCTTGGTCCTCCAAGAGCTTGTGACTTGGCAAGAGATGTAATACACCTACAAGGACTCACGATCCAATCCCGTAGCTGCCTCAGTGCCGGTCTACAGTCGTTTTGAAATGAACTTAATTCTGCCTGGAGCTGTCAAGGAAAGCGTCATGAAGGCATCAAGTGTGTGGGCTGAGAATGGAAAGGTACATGAGGCTATTCCGGAAAGAAAAACTAGAGGAAGGATGTGTAGAGTCATTACATGGGGCAAATTATATAAAGATAAATAAACACACACACACACACACACACACACACACACACACACACACACACACACACACAGAGGAGTCCAGAGAAGCTGTTGGATCCTGAAACTGATGATAGATGACTGTGAGCTACCATGTGGGTGCCGGGAACCACAGTGCTCTTAAGTCCTGAGCCATCTTCCGAGCCCCACAGATGAGATCTTTGTAGCATGGGTAAAGGAGATGGTAAATTCGATGGATAAGTCTAGAGAGGACTTATCAGGCTGTATTTTATGTGCTTACATCTTGTTTATGCTGGCAAGATGATGGAAAGCCACTGAGAGGCTATGCATCAAGAAGTGTCACCGGGCAGAGTGGCTCACACCTTCAATCCCAGCATTTGGGGGCAGGTCTCTGACTTTAAGGCCAGCTTAGTCTACATAAGGAATTCCAGGACAGCCAGGGCTACACAGTAAGACTTTGTCTCAAGGAAAAAAGAAGGGATCATGGGTTGGTGAGATGGCTCGGCTGATAAAAGCCCTTGCTGCTCAGATCTGGTAACTTGAGTTTGATCTCTGGAACCTACAAGAAGGCGAAAAGAGACCATGATGTTGTCCTCTGACCTCTATATGTATACTGCGACACGAGACGCCCTGTCGTGCACATATGCTCACAGTAATAATTTAAAAAATTGTAAATTTATATGTGTGCATGTGTGTGCTGGGGGGTGTGCACATGTGGGTCTAAAAGACGATGTTGGAACCCCTGGAGTCTGACGACAAGCACACCCTTCCTGAAATAGATTCTCACATAGGGCAATTGCGAACTACCTGATGTGTGTGGTGGGAACTGAACTCTGGCTATGCCAAGAGCAGTATATACTGAGCCATCTCTCCATCCCAAATGTGGTGTCACCTGCACGGGGATGTCCTGGTACTCAGAGATCTGCCCGCTTCTGCCTTCTAAATGCCCAGCATAATTAAAAAACAAAAACAACCCTTTGTGTATGTATGTGAGTCTGTATATGATGTGTATGTACATTTGTGTGTAAGAGTGTGTTTGTGAAGGTATGTGATGTGGGTACACATTTGTGTGGGTGTGTGTGTAGGTATATGACATATATATGGACACTTATGTGTGTGTGAGTGTGCATATGAAGTGAACTTTGAAAAGGACAACCTCAGGTGTCAGCCCTCGCCTTCCACCTCATCTGAGACAAGCTCTCTGTGCTGCTTGCAGTGACATACTCTTAGCCTGTAGAGGACATTCATGGTGGATCAGCGAGGGAGTGTGGGGGCCAATAAGAACCGAGAGAGGCAGACTCAGAGCGCCCACGCGAGCTACGTGCTTAGTTAACTGAGTGCTGCTTATTCTGGAGACAAGCACACCCTTCCCGACTGGATTCCCACATCCTTGGCTTAGTGAGCTTATTCTTTGGGGTTCAGCTTACACGCTTTCTTTGTCTGAGCTTTCTCTGAACCCCAGGCAAAGTTACAGACGTCACGTGTTCCCACATTCTGTTTGTGAATTGCTAACAGCCCACACTGTGTTAAATCATTCCGACTCCAATGGCTGAATCGTAATCATCTCTGCTTAGTTTCCTTGTTCTCCAGTCCCATAATTTCTTGCCCAGGCCAAGGACACAGTCAACTTTGATTTTTTTTGTTATTTCTTTCACTAATTTATTCATCCACTGCCGTGCTGGGATTAAATGCAAGACTGCATATATGTTAGGCAAGGGCTCTACCACTGACTTGCATTATTATCCCACAGCTGCACATTATTTAATCAACCAGCCAGCAAATGAAATGGAAATGTCCTTCTAGTCAATATTCTAGGAAAAGAAACCTGAGCACAGAGGCGACTGGTACAGACACCAAGGCGTCCGTTCTGATGGCGGCTGCAGCTCGTGATGGGCACTTACTTGTTGTGTGTGAGACCTGGGTTTGATCTCTTGCAATTACAAGAGGATTCCGAGGAGGGCAAGGATATGGACAGATGAAAGGAATCAGTGAAACGTGCCCAGGTCACAAGTAAATCCCTCAAGAACAGAGCTTAGGATGAACAGTAACTTCCCGGGGCCAGAACCTGGGGAAGTGAAATGTGTCTAGTATTGGCTTAAGCAATGGCTAAGACACCGTGTGTCTGAGGGCTTGGGACCAGCTTTTGCAGTGATCCCTGGAAATACATACACGGACACGCCCTCCACTGCTTCCTGTGGGGTTCTCCCTTCCCGTGGAGAAACTCCAAGCTTCTGTCTCCTAGAAAACTCAAAGCAGGGAGGCCAAAGCTCAACTCTTCTCCCCTTCTCGGATATAATTTGTATCGGGTAGCAATGTGTCATGACTTGAATTTGTAAGCATCAAAAAATGTTCAATTATGCAG
Seq C2 exon
ATTAAACGAACATCCAAGCAGTCACTGGAGCCCCCAGCTGAGTTATTTCGAGTATCGAAGGTTACTGCGGAACCTCACAGCCCTCCTCATCCGAGCTACGTACGGAGAATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667:ENSRNOT00000036947:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(48.1=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]