MmuINT0089759 @ mm10
Intron Retention
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:153145639-153149117:-
Coord C1 exon
chr1:153148928-153149117
Coord A exon
chr1:153145752-153148927
Coord C2 exon
chr1:153145639-153145751
Length
3176 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GAAAATGTTCAATTATGCAGACT
3' ss Score
3.44
Exon sequences
Seq C1 exon
CCAAATTCCTCGGTAACCAGCAAGTGAGTTACGGGCAGAGCCTGTCTTTTGACTACCGCGTGGACAGAGGAGGTAGACAGCCGTCTGCCTACGATGTGATCCTGGAAGGTGCTGGTCTACAGATCAGAGCTCCTCTGATGGCTCCAGGCAAGACACTTCCCTGTGGGATCACAAAGACTTACACATTCAG
Seq A exon
GTAAAAAGAGGCCACAAGCACACCAACCAGCTAGAGCCATGTTGTTTGTTCACACATGCGTCCCATCACACATCCAGCCAGTAGGCTTTTCTGAGCCATGTGGGTTACTAGGCACGGTGTTACATGCAGAAACAGGACACTGTTCCTTCCCTCTGGTAGCTGACAGGTTCACAGGCATGGGGAGAGAATCATGTACAGCCAGTTGGGTGACTGAGATAACAGGGCAGACACAGGTATTCTGAAGACACATAAGAGGTACAGCTGCACTGGTAACAGAGATACTTGTCCCGAGAAGGTGAGGTAAGTGTGGAAGGCAGTCTTGATGGGAAGGAAGAGGGTCAGCAGGCAGAGGAAATGTACTTGGAATCACTAGTAGTTGAATTCCAATGGAACAAGAAGTGGGGTGAGGAGTGTGGGGAGGACTGAGCTCAGAGGAACTGCTGCAGGTGACATTGCAGAGCCGGGATCCATCCGATAGAAAGTGGCTTTGGACTGATGGGTTCAGAGAGGCAGTGGAGGGAAGCTGTGCCCACTCGGTTGGTGCTTTGTACTGTTAGAGGCTAAGAAAGATGGAATAGGATCTTGGTCCTCCAAGAGCTTGTGATCTGGTGAGATCTATAACACACCTAAAAGCAGACACAATACAGTCCAGTAGCTGCCTCGGTTCTGGTAAACGTTTGCTTTGAAATGAGCTTAATTCTGCCTGGAGCTTCATGAAGGCATCAAGTGTGTGGGCTGAGAATGGAAAGATACAGAAGGCTATTCCAGAAAGAAACATTAGAGGAAGACAACCTCTATGTGTGAATATCCGGGAGGATGTTCCCTTGGAACTGATGGTGGATGGTTGTTGTGAACTACCATGTGGGTGCTGGGAACCACAGTATATTTTATTTTATTTTGGTTTTTTTGTTTTTTTGTTTGTTTGTTTGTTTTAGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCACTCTGTAGACCAGAATGACCTCAAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCACCAGTACTGAGCCATCTCCTGAGCCCCATGGATAATATCTTTGTAACTGGAACATAGCATGGATAAGGGAGATGGATAAATAAGATTTATACATCTAGAAAGGACTTACCAGGCTGTATCTTTTGTGTCATGCCAGGTGCTTACATCTTGTCTGTGCTGACCAGATGATGGAAAGCCACTGAGAGGCTGTCACCGGGCATAGTGGCGCATGCCTTCAATCCCAGCACTTGGGAGGTAGAGGCAGGCAGATCTCTGACTTCGAGGCCAGCCTAGTCTACATAATGAGTTCCAGGACAGCCAAGGGGTACATAGTGAGACTTTGTCTCAAGAAAAAAAGAAAAGTGTCATGGGTTGGTGAGATGGTTCAGCTGATAAAAGGACTTGCTGCTCAGATCTGGTAACTCAAGTTTGATTTCTGGAACCTGCAAGAAGGTGAAAAGAGATCATAAAGTTGTCTTCTGGTCTCTGCATGTGTACTGTGACATGAGACACTCTGCCATGCATATATGCACATAATAATGATTTTTTAAAAATTAAATTTATATGTGTGTGTATGTGTCAGGGGGTATGTACATGTGAGTCTAAAAGAGGATGTTGGAACCCCTGAAGTTGGAGTTAAGGCAGTTGTGAGCTACCTGATGTATGTGGTAGGAACTGAACTCTAGTCGTATGCAAGAGTGGTATATACTGAGCCATCATCTCTCCAGCCCAAATTATATACATATATGGTATCACTTGCATGTGGATGTCCTGGAGCTCAGAGATCTGCCTGCTTTTGCCCTCTAAATGCCCAACATAGTTACATACATACATACACACACACACACACACACACACACAAAGAAACCTCCTTTGTGTATGTGTGTGAGTCTGTGTAGGTGTGTGATGTATATGTACATTTGTGTGTGTATGAGTGTGTCTGTGCATACATATCATATACCTATACAGACACACTCACACACACACAAATGTATGCACACTTGTGTGTGTGAGTGAGTGTGCAGTGAAGGAGTGAGGGGGCCAATAGGAGCAGAGAGAGGCAGACTTAGAGCGAGCACCCACATGAACTCAGTGCTTAATTACCTGAGTGCTACTTACTCTGATGACGTGTGCCCCCTTCCTGCCTGGAGTCTCACATCCTCGGCTCAGTGAGCTTATTCTTTGGGGTTCCGCTTACATGCTTTCTTTCTCTGAGCCCCAGGCAAAGTTACAGACATCATGCGTTCGTTCCCACGGTGTTCTGTTTGTGAATTGCCAACGGCCCAAACTGGATTAAATTATTCCAACTCCAACGGCTGAATCTTAATCATCTCTGCCTAGTTTTATTTTCCCCCAATCCCATAATTTCTTGCCCAGGCCAAGGACACAGTCAACTTTGATTTTTTTAAAAGTTTCTTTCACTAATTTATTCATTCATCGCAGTGCTGGGATTAAACATGCAGGGCTGTGTATATGTCTTTACCGCTTGCTGACTTGTATCCCCAGCCCCACAACCACGCTTTGTTTAATCAGCCAGTCAGAGAACGAATTGAAAGGGTCTTTCTTACGGTCAGTATCCCAGGAACAGAAACCTGAAGGCTAGCACAGAGACAACTGGTACAGGCACCACGGGCTTCATTCTGATGGCAGCTTCAGCCCGTGGTGGGCACTTGCCTGGTGTGTGTGAGGCCTGGGTTTGATCCCCTGCACTTACAAAAGGATTCCAGGGAGGGCAAGGGTATGGACAGATGGAAGGAGTCAATGAAACATGCCCAGGTCACAAGTACATCCCTTAAGAACAAAGCTTAGAATAAACAGTAACTTTCCAGGGCCAGAACCTGGGGAGCTGAAATGTGTCAAGTATTGGGTTATGCAATGGCTAAGAGTATTGCATGTGTCTGAGGGCTCGGGACCAGCTTTTGCAGTGATCCCTGGAAATATATACACGGACACACCCTCTACTGCTTCCTGTGGGATTCTCCCTTCCTGTGGAGAGAGAAAACTCCAAGCTTCTGTCTCCTAGAAAACTCGAAGCCAACGCTCAACTGTTCTCACCTTCTCGGACATAACTTGTATCAGGTATCATGTGGCATGACTTGAATTTGTAAACATTGGAAAATGTTCAATTATGCAG
Seq C2 exon
ACTGAATGAACATCCAAGCAGTCACTGGAGTCCCCAGCTGAGTTATTTCGAATATCGAAGGTTACTGCGGAACCTCACAGCCCTCCTGATCCGAGCTACGTACGGAGAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479:ENSMUST00000185356:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(48.1=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(29.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types