BtaINT0087698 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98219989-98221924:+
Coord C1 exon
chr11:98219989-98220063
Coord A exon
chr11:98220064-98221843
Coord C2 exon
chr11:98221844-98221924
Length
1780 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTCTCGTCTTCTGTTTAGATT
3' ss Score
8.68
Exon sequences
Seq C1 exon
AGCGCCATGCAGAAGGCAGCCTTCGAGGCTCTCCAGGTGAAGAAGGACCTGATGCATCGGCAGATCCGGAAGCAG
Seq A exon
GTGAGTGCGGCCCTGCCCCCCAGGCCCGCCCTGTGGGCATTCAGAGGCCGCAGTTAAGGTCTGAGTCCTGGCTCCTCCAGGCCAGGCCGGCAGGAGGTCTCCCCAGCACGGGGCGTCACCTACTCGGGGTGTCTGGAGGTACCTGAGACAGCACTGTGGGTGCTGGCTGGTGGGACCTGTGCCCACCACTTGTCACGATGCCCAGAGCTGAGGGAGGGTGGCCCTGACAGCTGGGCAGCCCCACGCTGACCAACCCCAGGCAGGACCTCTCAGCCGGCTCGAACCGCAGAGTCCTGTGGCCCGGATGGAGGAGCTGGGACAGGTGACGCCCCACCTGGGTGGGCGGAGCCCTGAAGAGGGGACGTGCTCTCGAGTGGCCTCCGCTGCTGACCCCCGGGTGACCTTGGGTGAGCCGTTGCCCAGCGGGGCTGTGTCTGGCTCACTACTCTTCCCTGGGCAGGTGGCAGGGTGGCTGGAGACAAGCGAGCTTTCAGGCTACAGGACGCACATCACGTCGTATTCAGCACACTTTCAATTTCACATTTTGCATGGTTTTTTTTTCTTCTTCTTTTTCTTTTCTTTTTTGGCCAAAACCAACTTACCTTTTTATTTCCCCTTTAATTTCAACCCTACATTGCCGGACATGAATCTCATTCCTCTGACCAGGGGTTGGTGGGGTCATAAGGGCAAAGGTCACAGGTCAAAGGCACAGAGTAGAGAAGTCACTGGCTGGGGGGGTCTGACCCCCAGGACTAAAAGCCCCCACTCACACCCTGGAGGTATGTGGTGATCCCCTAGATGTTCTCACTATGGGTGGTTCTGACCCACCAAGCCAACTGTTCCTCTGGAGACCACAAGCAGGGACAACCTCAAGGAAAAGGCACACTCATTTACCCGCTGTGTGTCCTTGGGCAAGTTACTTAATATCTCTGAGCCTCGGTTTCCTTGTCTGTGAAATGGAGGTAGTAATACCTCCAACAGCAAGGAGAAGCGATGGCAAAGACGCGTAAAAAGTGCCCAGCACAGTCCTAGCGTGTGCCATCTCTATAAATGTCGGCAACTATATTACTGTCCGGAGAAGGCAATGGCACCCCACTCCACTACTCTTGCCTGGAAAATCCATGGACGGAGGAGCCTGGTAGGCTGTAGTCCATGGGGTCGCTAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTTTACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTAATGGGCTGCTGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCATATTACTGTTACTGTAATCCAGTTCCTTCCATTCCCCTCCGCTCGCCTCTGTGTACAGCTGTCTAGAGGAAGCAAGAGAATTGGACTGGCAAGAGGCTCTGAGAATTCCGTGTCTGTTCTTCACTCTGGCCCGCACCTTGAAGGAAGCCCCTTCGTCCCACACACCCTGATGGGCACCCCCTCTGGGCCGGCCCTGTGCCTGGCTTTTGATCAGCAGTTCTGGCCGGGATAAGCACTCAGGCCCGTGAGATAATGAATTCTGTTTAAAGCCCCGCTGATAAGGTTTACCAGGTTCTCAGTCCCCTTTATTCCAGAGCCTCCCCCGCCCCCCCAGAAAGGATTCTTAGGTCCGCTTGGCCATCCAGGAGCAGCAGTGCAGGACTGAACCATGTTAACGTGAATTAAAAACCCCTGTCTCGTCTTCTGTTTAG
Seq C2 exon
ATTAAGTTAATAGAAACTGAGTTATTGCAGTTGACACAGCTGGAGTTAAAGAGGAAATCCCTGGACACAGAGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844:ENSBTAT00000017067:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development