MmuINT0093476 @ mm10
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32935168-32936510:-
Coord C1 exon
chr2:32936436-32936510
Coord A exon
chr2:32935249-32936435
Coord C2 exon
chr2:32935168-32935248
Length
1187 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTGTTTCGTCTTCTGTTTAGATT
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGTGTAATGCAGAAGGCTGCCTTCGAGGCTCTCCAGGTGAAGAAGGACCTGATGCATCGGCAGATCAGGAACCAG
Seq A exon
GTGAGTGCTGGCCGGGCCACCTCGTCCTGCTCCTGCTTGCAGATCTGGCTCACGGGGTAACAGTTATTAAAACTCGAACCCATGGCTTACCACTTTGGAGACCTCCTTTTCCTCAACATTCCACAATGGGGCTGATGGGTTGTGCCTTGAACAGCACTGAAGGTGGTGGCTTCATCCCAGAGCCTGGCCAGAAGCCTGCTGGGCAAGTGCAGTGTGTTTCCCTAATGCCTGGCTGGAGGAAGGGCAGCGCTTACAGGACTCTCTGGGAAACTTGCCGGCTCAGACTCCAGTGCCTGCGTCAGCTCAATATCACTGATGGACACATGGCTTCTTGGGGTGGGTTGGAATTCCCAATTGATTGGGAAGCCAGGTCCTAAGACCTCTAAGGATGGACCCTGGCCTGGGAGGAGGAGACCACCCTCCCATCCATGGAGTAGCCTTGGGCGGGGCCCCTGCTGGGTGGAGGGGGGCTGGGACCAGAGGCGCTGCAAGCTGTCAGGCTATGGGAACACACGTCGCTGTGGATTCACACACTGTACCCACATTTTTGCATGCTCTCTTTTCTTTTCCTTTCTTTTCTTGTTTGACTTTAACAAACTTAATTTTTTAAACCTCCCTCTTTAATTTCAATCCCACATTGCCAGACATGAAGCTCATTCCTCTGACCAGGGAGGGGTTGGTGGCGTCAGATACTCAGGGTTGCGAGAGGCCACAGGGTCCTTGGCTGGCATGGGGTAGAGAAGTCACTGACTGTGAGCCTGTGGTGACCCCAGATATTCTCAATGACCCTGTTCCGTTTCAGACCCTGAGTTGGGATATTCCAGACAAACGATCTCTCAGTTACCTACTCTTTGGCAAACTAACGACACTAAGCGTCCATTTCCTTGTCCTTGTAACTAAGGCAGTTACACCCCAAGAGCCAGGGAGCTGCTGCTGCAGCCCAGCCTAGCACATAGTAGGTGATCAACACATAACTGAGGCTCGTCATTGGATCATTTTGTTGTCCTCCGGCCCCGTGGTAGCTTGTTTTCACTCTCTTCAGTGAGGTCCCAAGACTCACAGGTTCCCCTCTGTCCAGGGCTGCCCAGCCTCCTGACAGGTTTCTGAGTCCCTGCTTAGCCAAGCGGCGGCACATAAGGGATCCGTGGTGATTGTGAATCAACGTCCCTGTTTCGTCTTCTGTTTAG
Seq C2 exon
ATTAGGCTAATAGAAACTGAGTTACTGCAGCTGACACAGCTGGAGTTAAAGAGGAAGTCCCTGGACACAGAGACGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792:ENSMUST00000113200:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types