BtaINT0087909 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44397082-44400578:-
Coord C1 exon
chr29:44400257-44400578
Coord A exon
chr29:44397412-44400256
Coord C2 exon
chr29:44397082-44397411
Length
2845 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GACCCACCTCTCCTCCCCAGTGG
3' ss Score
7.87
Exon sequences
Seq C1 exon
ATGCCCGGGCCCCGTGGGGCTGCTGGCGGCCTGGCCCCTGAGATGCGCGGGGCGGGGGCGGCGGGGCTGCTGGCGCTGCTGCTGCTGCTGCTGCTGGGCCCGGGCGGCGGGGCCGAGGGGGGGCCGGCGGGCGAGAGGGGCGCTGGCGGGGGCGGGGCGCTGGCCCGCGAGCGCTTCAAGGTGGTCTTTGCGCCGGTGATCTGCAAGCGGACCTGTCTCAAGGGCCAGTGTCGGGACAGTTGTCAGAAGGGCTCCAACATGACGCTCATCGGAGAGAACGGCCACAGCACCGACACGCTCACGGGCTCCGGCTTCCGCGTGG
Seq A exon
GTGAGGGCCGGGGGCGCGGGCGGGGGGCGCGGGGAAGGCCAGCTCCCGGAGCCCACGTGGGAGACATGGCAGCGGAGGCCTTGTGACCCTGGCGACCGTGGGTTCAGAGAGCGGAACCGGAGGGCCGCGGGCCCCAGGGGCTTCAGGGGTCTTGGGAGGCTGGAGTGCTGGGGTCGCGGTTGGGAGGGCTGCGTGGAAGCCTGGACTTCACAGCTTTGGGTTGGGGTTGAGGCCTAAGGTGTGGGGTCATGCTGGTGCCCTGGATGGCACAGGCTTCTAGGAAAGTGCTGGGTTCTGAGAGGGAGTCGAGGTCGACAGGCAGGGGCTTTTGCGGGGATGCCAGCTGGCCCAGGTCTCAGAGAAGGGTTAAGTATTCCCCCTAGAAACAGACTCGGTGAAAGAAACAGGAAAAGTCTTTAAAAAATGTCTCAAGTAGGGCCTGCCAGCGGTAGACACCTGCATTCCCTGGGAGGAGGAGCCAAGCTCAGGCTGGGAGTGAGGGAATTAGTTACTGGCGAGGTCTTAGAGGGGAGGGGCGTTGAGGCCTAACAAGTGGGGCACAGGCCTGGAGGTAGGGGCTGGCTTGGATCCTCGGTCTCTCCTTTTCCTGATGCCCCATCTGTGCTTCCCCCAGAAGCTCTGAACAGTTCCGCCTCAGAGTCTACCCCCAACTCCCCAAACCCTGAAAACTCCCCCTGGTCCTGGAGCCCACCCTTCTCCCAACATCGCTCTTCAAAGGGCCAGGCCTGGGGCTCGGCGCTCCTCCCCCAGGGCCCTGTGGGCCAGGCTGGGGGAGGTGTCCCAGCAGTAATTACCCTCCTGGACAGGGTAATTAGGCTAGGCCCACGATGGCACCAGCAAAACAGCCCCTCTCACACACTCCTATACTCACATAGCCACTACAGATCTGAGGAACCCCACAGATGTGGCTCACGCTTCTCATAAGATGTGTGCATGCGTGCTTACACATGGCATACACGCAGGGGTATGCCCGGGCTTTGGGCTGGCACACTGGGCTCAAGTACAGGTTTCTTTGTGTTATCTTGGGTGCACGTCTGCAGTGACTATGGGAGTGTTTATGTAAGCCTGTGTTGGTGTCAGAATGAGTCTGTGCATGTGTGTGTGTGATGAGATGACTGTGCATGTGAGTGTCCCTGGGCCCGGCCTCCCAAGCCCCCGGCCATCCTGCCCAGGCTGCTGTCTCCATCCGTGCTGCCCACATCCCTCAGGCTCGGTGCCCAGGCCACAGTGGGCGGGTGTCACTGGGAGGTCACCCTCACCGCTGTGGGTGACTCACTGGGAGGCAGGAAGGAGAGGATCCTGCCTCCCCCAGCCCAGGACACACCCCTTCTGCCCTGAGAATCTGGCCCCCAGAGGCCAAGCAGGATGGGCTGGGCTGGGCTGGGCTGGGATGCTCGTAGCCAGGCCCCGGTGGCCTTGCATGTGGGCCATCCCTCTGAGGCCCTCCAGGTGTCCAGGGGGCAGCACCCCTACTTCCCCATCCTGGCAAGTGAGGGCAGTCCTGGGGGAGGGGCCGGAGAGGGGCTGGGCTTGGTGCACAAGCACAGGTCCCCAAGGCTGGATTTCAGATGTGAGTGTGTGACAGACAGACAGACAGACATCCCATCAGCTCCCTGAATTCACTCCTTCATTCATTCCCCCAGCACCTCCTCTGGCACCCAGAGCTGAGGCAGAGGGTGGGTGGGATGTGAGGAAGGGCTCTCCTCCTGGGGGAGGGGCTGGAAGGATATGATGTGAATATGCACAGATGGGGACTAGGCTCTGAGTGGGCAGAAATGGCATGGGTCAAGGCAGGGAAGCAGAAGACGTGGCACGTTTGTAGGAAACAGGAGATGAGTCCTGGAGCGTAGGGTGCACATGGAAAGAGCAGACGGGGATGGGCCGAAAGACGGTTCCTTCTGGGCCACGGAGAGCAAGCAGGGAAGCTAGCTGGGAGCAGGGCTGTGACTGAGCCGGAGCTTTACCCGAGGCAAGTTTCTCTGAGGGTGCTTGGGACGTGGACAGGCAGGGGAGGGGCAGGGGGCATGGGGAGGAGGGAAGATGGATTATGAGACATTACAGAGGCCAGAACTGGCTGGGGTGGGAGCAGGGGAGACTGGAGCCTCAAGACTCAGTTATGAATGACCGGGCAGGCAGGGATCCCAGTGGTGGTCCAAGGCCAAGAAGAGGTGGGGAGGCAGAATGCTGATTTCTGACAGGGTCCCCTGGGTGGAGTTGCTTAAGAGAGGTCCCAGCGGAGTACAGCTCAAGTTGGCAGTGGTGAGGTGCAGGCCCTGGGATGGCTGAACAGAGGGAGGGAGAGCCCAGAGGGGGCTGAGTCAGGGGAAGGACTGAGGGGCAAGGAGGAGGCACCAGATAGAGACTGGGTGTCCAGGAAAGGCCCAAGGGGAGGGAAAGGCTAGTCCATCACCATCATCAGCTGCTGCTGCTGCTTATTAAACACGCTCTGTGCACTGGGCACTGTGCAGAGTTTTGGACAGGCCTTGCTTCATTTAATAGATGGGACCGCCCTACAGATGAGGACACAGGCCTGGGAGGGGAAGTCAGTCGCTCAGGGTCACGCAGCTGGCACAGGGTCTCCTAGCTAGGATGCAAGTTCAAGATGCCAGTGGCCCCTAGGGTATAAGGATGTTGGGGGACCTAGAGGGTAGCATGTGTGTGTATCTGATGTGTTACTAAGGCCAGCTTCCCAGGGAGGACAGAACCAGTGGGTGGCTTGGAAGTAGGGAGGAGGGGAAAGAAGAGACAGGATGTGGGTGAGGGACTGGGTCTGGGCGCTGGCCACAGGGGTCTGCCTGGGCCCTGACCCACCTCTCCTCCCCAG
Seq C2 exon
TGGTGTGCCCCCTGCCCTGTATGAACGGCGGCCAGTGCTCCTCGCGAAACCAGTGCCTGTGTCCCCCGGACTTCACGGGTCGCTTCTGCCAGGTGCCGGCTGGAGGAGCTGGCGGAGGCGCTGGCGGCTCAGGCCCTGGGCTTGGCCGGGCCGGGGCCCTGTCCACGGGCGCGCTGCCGCCCCTGGCTCCAGAAGGCGAGTCTGTGGCCAGCAAGCACGCCATGTACGCGGTCCAGGTGATCGCCGATCCACCAGGGCCCGGGGAGGGGCCTCCTGCCCAGCATGCGACGTTCCTGGTGCCCCTCGGGCCAGGACAGATCTCAGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747:ENSBTAT00000008880:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.631
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]