HsaINT0097570 @ hg19
Intron Retention
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:6716]
Coordinates
chr11:65321522-65325699:-
Coord C1 exon
chr11:65325100-65325699
Coord A exon
chr11:65321852-65325099
Coord C2 exon
chr11:65321522-65321851
Length
3248 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GACCCCACTCTTCTCCCCAGTGG
3' ss Score
6.87
Exon sequences
Seq C1 exon
CTTGCTCCGGCCTCCTCGCTCCTGCCTGAGTTCGGGGCCTGGTCTGGGCTTCGTCCTGGGGCTGGGAAGTTTCTGCGCTCCCCGCTGTCCAGTCTGCATCTCCGCGCCTCCCGCCGGGCCCCCGCGGTCCCCTCCCGCCCGCTTCCCCCGCTGCCCTCCCTCGCTGCCCCCTACCCTCTCCCGGGGCTCCCGGCCCTCTACTCCCTTCGGGCGCGGGCCCCTCGCCCCGCCCGGGCGCGCCCCCCCTCCCCCGGGTCCTGCGGCCCCGGATGCCCGGGCCCCGAGGGGCTGCTGGCGGCCTGGCCCCTGAGATGCGCGGGGCGGGGGCGGCGGGGCTGCTGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGCCTGGGCGGCAGGGTCGAGGGGGGGCCGGCCGGCGAGCGGGGCGCAGGCGGGGGCGGGGCGCTGGCCCGCGAGCGCTTCAAGGTGGTCTTTGCGCCGGTGATCTGCAAGCGGACCTGTCTCAAGGGCCAGTGTCGGGACAGTTGTCAGCAGGGCTCCAACATGACGCTCATCGGAGAGAACGGCCACAGCACAGACACGCTCACGGGCTCCGGCTTCCGCGTGG
Seq A exon
GTGAGGGCCGGGGGCACGGCTGGGGGCAGGGGAAGGACAGGCACCAGGCCCGGTGGGAGAGCTAGTGGGGTCTTGGCCTTAGAGACTGGGGGCTGAGGGTATAAAGGGCAGAGATCCGAGGGCCTGGGGGACCAGGGGCCTCAGGGAACTTGGGAGGCTGGAACTCTGGGGGCCAGAGTTGGAGGGCTGCATGGAGGCCTGGACTTTGAAGCTTTGCGTTAGGGTTGGGGCCTAAGGGGTGGGGAAATGCAGAGGTCCTGGATGACACTGGCTTCCCAGAAGGTGCTGAGTTCTGAGCAGGAGCACACAGGGTTTTTGAGGAATGTGAGCCGGGGACAGGAAGCCTCAGAGAAGGGCTAAATATTCCCGCAAGAAGCAGACTTGCTGGAAGAAACAAGAAAAGTCTTTACAAAATGTCTAAAGTAGGGCCTGCCAGAGTAGACACCTGCATTCCCTGGGAGGAGGAGCTAAGGTCAGGGCTGGGGATGGGAGCCGGCTACTGGCAAGGTCTGAGTAGGGAGGGTGTTGAGGCCTAAAAGTAGGGTGCAGGCCTGAAGGTAGGGACTAGTTCGGGGTTCTCAGCCTCTCCTTTTCCAATGCCTCCCCATAAGCTCCTAACATCCTGCCTCAGAGGCCCTCAGGGCCCCCCTCATCCTCCCCCAAGCCCCTACACCCTCCCCAGTTCAGCTTGGAGTCCACCCCCTCCCCAGCATCTCTCTTTAAAGGGCCAGGCCTGGGGCTCAGTCATCCTCCTGCTAGGCCCCGTGGGCCAGGCTCGGGGAGGTGTCCCAGCAGTAATTACCCTCCTGGACAGGGTAATTAGGCCAGGCCCAGGATGGCACCAGCAAAACAGCCCCTCTTACACATTCCTATATTCACTCTCCCACTCACAGAGCTAAGGAACCCCACTCATGTGGCTCAAATTTGTCATGAGATGGGGTGTGCGTGCGTGTGTCTGTGCGCATATTGCCCCTGTGTCTGGGGTCATGCCATGGGCATGGCGTGGCACACTGTGAAGTACCCGTCTTTGTGTTGTCTTGGGTGTGTGTCTCTAGTCGCTGTTAGAGAGTATGTGGGAATGTTTTTGTTTTTGTGTTTTTGAGATGGAGTTTTGCTCTTGTTACCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCCCCCTTCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCACGCCTGGCCAATTTTTTTGTATTTAGTAGAGATGGAGTTTCACCATGTTGGTCAGCCTGGTCTCAAACTCCTGATCTCGAGTGATCTACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCAAATGTATGGGAATGTTTATGTGAACCTGTGTTGGTGTCAGGATGAGTCTCTGTGTGTGTGTGACAAGAGGACTGTGGGTGTGAGTGTACGTGTGTCCATCTCCCAGGCTCCCTGGCCATCCTGCCCAGGCTGCTGTCTCCATCTGTGCTGCCCACATCCCCCAGGCTCGGTGCCCAGGCCACAGTGGGCGGGTGTCATTGGGAGGTCACTCTCACCGCTATGAGTGACTCACTGGCAGAAAGGAAAAAGAGAATCCTACCTCCCCCCGCCCAGGACACACCCCTCTGCTCTGTGAGGCCTGGCCCCAAGAGGCCAGGCAGGATGGGCTGGGCTGGGATGTGCTTAGCCTGACCCTGAGGGCCATGGATATGGGCTGTCCCTGTGAGGCCCTTCTGGCATCCAGGAGAGCAGCACCCCCGCCCTCCTGCCCTCCTGCCCTGGGAAGTGAGGGCAGCCATGGGGTGGGCAGGAGAAGGGCTGGGGCTTTGGGATGAGTCAGAGCCCCAAGGCTGGTAGTAGCACAGGTTGAAGGTGAGTATGGGACAGAAACAGACAGAGGTCCCATCCTCTCCCTCAGTCATTCTTTCATTCATTCCCCCGAACCCCCTGTGGGACCCAGAGCTGAGGCCAGCCTGGCCCTGCCTTCCAGAGCACCCTCTATAAGGAGGCAGACAGACAAGAACATAGCCAAGCAGGTGCCAGGCAGAGCTGGCCAGTGGGTGGTAAGGCAGGAGAGGGAGCTCAGGGGGGCCGGATAGGAGGAAAGCCTCCCTCCTGGTGGAGACACTGAGCTAGGAAGGATGAGATCTGCATATATAGAGAGGGGGGGGACCTGGGGCCCTGTTGTGGAGGGAAGGGCATGGATGAGGCCAGGAGGCAGGAGGCAGGCACATTTGCAAGAGGGAGATGGGTCCTGGGGTGTGCAGTACACAGGGAAGGAGCAGAGGGGGATGGGCTGAAAAGGTTCTGGTCCATGGAGTGAGCTTCTGCCTGAGGCAGGTTTCTCTGGGACACTGAGATTGTGGACCAGCAGGAGAGGCTGGAAGCCAAGGAGGGGTCTGGGTGGCCAGGCCTGGGCCAGGGCAGGAGCAGTGGCCCTAGGGAGGAGGGGAGGCAGGTTCATGGGACATTAGAGGCTGTAACTGGGCAGGGGAGAGCAGGAGGGACGGAGCCGTCGGGGCTCAGCTGTGGATGCCTGGTGGCCAGGTGAAGAGGAGGTGGGGAGGCAGGATGCTGACTTCTGACAGTATGTCCTGGGCAGAGGTGCCTGAGAGAGCCCTGGAAAGGCTGGGGGCTGTGTCTGTGTCTTGAGATGTGGACATCTTTGGCAGTGGTGAGGTGGGCGCCCCAGGATGGTGAAGAGGGAGAGGGTGGAGAGCAGGCAGAGAGGACTGAGGCCTGAAGGAGGGAAGGGTTTATGGGAGAAGAGGAGGAGGCGCCAGGGACGGAGCCAATACCTTTGGAAGGCTCAAGGGGAAAGCCAGATCACCATAATTATTTGCTACCACTTATTAAGCACCCTTTGTGTACCAGGCCCTGGGGTAAGCATTTGTACAGCCCTTACCTCATCTAACCCACACATCTCTACAGATGAGGACGCTGGGGCACAGGGAGGGGACGTGAGTTGCTCAGGGTCGCACAGCTGGCACATGGCTTAGCGAGGATTTAAATCCTGGACTTGAGACTCCAGAACCCAACATAGGTGTAAGGATGTTGGGGAACCTAGAGAGGGCAGTTTCCCTATGTAGGATGTATCTCAAAACCTGGCTTCCCAAGAGGACAGAGCCAGTGGGTGGCAAGGAAGTAGGGAGGAGGGGAAAGAGACAGGATGTGGGTGAGGGCCTGACCCCACTCTTCTCCCCAG
Seq C2 exon
TGGTGTGCCCTCTCCCCTGCATGAATGGCGGCCAGTGCTCCTCGCGAAACCAGTGCCTGTGTCCCCCGGACTTCACTGGGCGCTTCTGCCAGGTGCCCGCAGGAGGAGCCGGTGGGGGTACCGGCGGCTCAGGCCCCGGCCTGAGCAGGACAGGGGCCCTGTCCACAGGGGCGCTGCCGCCCCTGGCTCCGGAGGGCGACTCTGTGGCCAGCAAGCACGCCATCTACGCCGTCCAGGTGATCGCTGACCCTCCTGGGCCCGGGGAGGGGCCTCCTGCCCAGCACGCAGCCTTCCTGGTGCCCCTAGGCCCGGGACAGATCTCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-LTBP3:NM_001130144:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.604
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)