MmuINT0093731 @ mm9
Intron Retention
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5741335-5745769:+
Coord C1 exon
chr19:5741335-5742562
Coord A exon
chr19:5742563-5745439
Coord C2 exon
chr19:5745440-5745769
Length
2877 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GACCCCTGTCTCCTCCTCAGTGG
3' ss Score
7.82
Exon sequences
Seq C1 exon
GCCACAGGGTTCTCCCCGGCCAGTAAACCCTGGCCAGAAGGTGCTCTCTCCTGCTTAAATCCTTTCCTTCGAGAGAAGACAGGACCAGGAATAAGGACCCATGACTTCAGGGCTTCGAGAACCCCTACATGTACAAAGGCCAATGGGCAAAAGTTAACAGACCTCTGATCCTCCAAGCAAGGACCATCTGCCTCGGTTTCCCCATTTTGACCAGGTGGAAAAGTAGTTGGGCGGGGGAGGTGTGCACAGGCCTCTGCACCCCGCCCGGAGGAATCTGGCGGAGTCCCCAGGTGAGGATTCTTCTGGAAAGAACCCAGGTCGGTTCCTGCGCGGGGCGGGCACCTAGGGGGCTGCCCCCACTCCAACCGGCGCCCTCCCTGCCGCACATCGTCGCTTCTCCGGGCAGCAGCGAAAGACGCTTGAACCAGAAGGAAAAAGAGAGAGGAGAAAAAAAAATTGTCTCCCTGGCCCCGGGCCAGCGTCCCAGCCCCCCTCGCCGCCGGCGCGCTCCAGCCAGGGAAAACAACTGCTCACTTCTCCCTGCGTCCTCCCCGCGCGCTCCCTGCTTCCCGGCGGCCGCGGGAGAGGAGCCCGGCCAGGGGGAGGCGCGGAGCGGGCTGGCCGCCCGGCCTTCCTCTCCCCTCGCTCCTCCTCTCCGCCTCCACTTGCTCCGGCCTCCTCGCTGCGGCCTCAGTTCGGGGCCTGGCTGGGTTTCTCCCGGCCAGGGAAGTTTCTTCGCTCTACCCTCAGTGCAGCTTCCATCGCTCTCCCTCGCAACGGGGATCCCGGCCGCTCCTGCTGTCCCCTCCCTACCCTTGGCTTCTCGCCCCGCTCTGCCCTCTGCTACCAACACTCGATCCCCTGCTCGGGCTCGACCTCCAATCTCCGAGGGTCGTGCGGCCCCGGATGCCCGGGCCCCGAGGGGCTGCCCACGGCCTGGCCCCTGCGATGCGCCAGGCCGGGGCATTGGGGCTGCTGGCACTACTCCTGCTGGCGCTGCTGGGCCCCGGCGGCGGGGCCGAGGGTGGGCCGGCCGGCGAGCGGGGCACAGGCGGGGGCGGGGCGCTGGCCCGCGAACGCTTCAAGGTGGTCTTTGCGCCAGTGATCTGCAAGCGGACCTGTCTGAAGGGCCAGTGTCGGGACAGCTGTCAGCAGGGCTCCAACATGACGCTCATCGGAGAGAACGGCCACAGCACCGACACGCTCACCGGTTCTGGCTTCCGCGTGG
Seq A exon
GTGAGGGCCAGGGGGCTCTGGCTGGGGACATAAGGAAGGGCAGGCAACAGCACCAGGCAGGAAACAGAGTGGAGCATTGGGGATAAGAGATGGGGAGCTGGGATACATCGATCGCGGATCTGGGGCCAGGGCTCTGAGAGGCTGCGGTCCATGGAAGACAGAGTGAGGTGCTGGGCTTTTAAGTATTGGATAAGGGTTGAGGCTTAAGCTCGGGTCTCGGATGACACAGAACTCCTGGGAGGTGCTCAGTTTGAAGAGGGAGCGTACAAGGGGTTGGAGAGATGAGAGCAAGGGTAGGAATTCACGCAGAAGGGGGTAAATATTTCACCCCCCAAACAGAAATCTTTCAACTGTCTCAAGTTTGGCCTGGTGGAAGGAGACACCTGTGTTCTCAGGAAGGCGGAGCTAGGATCAGGACTGGAATGAGGGACTTAGCTCTTGGCAAAATCTGAGGGGAAAAGGCTTTGAGGCCTAAGAAGTAGGGTACTAAATAATGGCACTGACCTGATGGGGGGAGAGAGAGGTGTCATTTGGGGTCCTCAAACAGCTAGTCTGTTACCTATATAACTCATCCGTTCCTATATAACTCATCCGTTCCTATATAACTCATCTGAAAGACCCTCAGAGCTGCCTCCACTCCAAGTCTGAGGGCCTCCTGGTCAACCTAGAGCCCACCTCTTCCTTTAGCCTCTCTCTAAAGAGAAGGCCTGGTGCTCAAGACTCCTCCCCTGGGGCCCTGTGGGCTAGGCTGGGGGGAGGTGTCCCAGTGGTAATTACCCTCCTGGACAGGGTAATTAGGCCGTGCCCAGGATGGTACCAGGAAAACAGCCCCTCTCACACATTCTTATGTTCACTCACAGCTTCGGACTCAAGGAGTCCCACTGTGTGCTTCCCAGTTCTCATGAGGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGCACACATGTGTATACACACGCACAGGCTTTGGCATGGCACGATGTGATCACTTCGTGTTCTGTGTGTCTACAGTCACTGTCTGGGAGTGTTTACACAATGAGCCCGTAGTATTTGTGTCAGAAGGAGTCTGTGTAGGACAGGATGACTGTGCATGTGAGCGTATGCATGCCCAGCCTCTCGGGCCCCCTGCAGGGCCATCCTGTGCAGGCTGCCGTCTCTGTCTATGCTGCCCACATCCCCCAGGCTCAGTGCCCGGGCCACAGTGGGAGGATGTCACTGAGAGGTCACACTCTCACCACCATGGGTGACTCACTGGAAAGCAGGAAGAAGAGGATTCTGCCCCCTCTGGCCCAGGACACACCTCTGTTGCCCTTGAGGCCTGGTCTCCAGAGACTAGACAGGATGGGATAGGCTAGTATGGGATGCTCTTAGCCCACCCTGATGATCAGGAATGAGTTAGGGCTGCCCTGTGAGTGTTCAGGAAAACAACACAGCCACCTTTCCTCCCCAGAATGCCGAGGAGTGGCCTTAGAGCAGGCAGGCAGGCAGGAGAGGAGCTGCGGTTGGGACTCAGGGACCTCCTTTGGAACACAGTGCTGAGGACCACCAGGCTTTGCCCTCCAAAATGCCTTTCATAGTGGTAAAGGCAAATATGACTACAACTCGGGAAAGTGCCAGCCAGGCTAGGCAGAGGGTAGAGAATGGGAAAACCTTTCCTTTCTGGGAGAGACACGGCCCAGAATCAGATCAGGACATGAAGCAACTGGCAAGGAGTCAGGAATATAGGGACAGATAGGCTATAACCATGAGAACACTGGCACACTGGTAAAGGGTGGATAGGTAGGTCCTAGGCAGGGGTGTACAGGGGCTGAACAGAGGGAGTTGGAGTCAAAGAAGGTTCTGGAACATGGCCTCAAACGTAAGACAGGGAGTAGAAAAGTAAGATGAGTGAAGGGGGAAGGGGTCTTCTCTGCTAGAACTTTGCCTGAGACACACACACAGTGAGCTCCAGGACAGACACACAGGCCTGTGAAGCAAGGCCTGGGGCACAGGGAGCCGCCTGCTGATGCCCACAGTCATCCAGGTGTTTGTAAGATTGGTGGCTGGGGAAAAGTCAGAAAATCTCCCCAGCACCCACAGCCCAGCCAATCCGGAGTCGCTGAACCTGCCCCCGACTCTTTCCTTGTCCCCCTCCTGTACCCATGTCTTGAGAATAGACATGGTTTAGATCTGGAAATCCCCTACTCCCCACTGCTCCTTTATTTAATTATGCTGGGATTGTGGACAGGTGGGCAAAGACCCTGAGGAGGACCAGAGATAGGCTTAGGGGACACTGTAGAGGCTGCAATTGGGACGCTAGAGTCTGTTACATGTGGCTGAACAGACAAGAATTCCCAGGGGTACTCCCAGGGAGACAGAGGTCTGTCAGTATCCTGGACCAGGTCCTGGTGAGGTTAGACATGGCATGTCGCTGGCAGCTATATGAGCTGAGGTAGGTAGCAAGATGGAGGGAGGAGATGAGGATGAGCTAGGGGAGAAACTTGAGACCTGAGCTAAGGGGAGAGCTTTGGTTGTCACTTCTGCACACTCTGTTCCACACTGGAGTAAGAGTCTGTATAGACAGTGCTCACTCGTGGGAACATTACCACCGGAGATGAGGCCCAGACGCAAGGGCCAGGGAAATAAGGCCTCAGAGAGAAGGGCATGTGGCCAGGAGTTAAGCCTGGAACTTTAGACTCCACAAGTCCTGGAGAGAAAAGTTTCGGGGACCTACAGAAGGCCATTTTCATGTGTGGGACCTGTTGTCAGTCAGGTTCCCAATAAGAGCAGAGCTAATGGGAAGTCCACACAGTGAGCCCAGGATGTGGGTGAGGATGGCCTGAAGAGAAACCAGGCCCTGACCCCTGTCTCCTCCTCAG
Seq C2 exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-Ltbp3:NM_008520:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.631
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: