BtaINT0089046 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010576 | MAP2K3
Description
Bos taurus mitogen-activated protein kinase kinase 3 (MAP2K3), mRNA. [Source:RefSeq mRNA;Acc:NM_001083693]
Coordinates
chr19:35868934-35869263:+
Coord C1 exon
chr19:35868934-35869047
Coord A exon
chr19:35869048-35869143
Coord C2 exon
chr19:35869144-35869263
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCAGCCCCTCCCCCCGCAGCGC
3' ss Score
10.01
Exon sequences
Seq C1 exon
AACTTTGAGGTGGAGGCGGATGACCTGGTGACCATTTCAGAGCTGGGCCGAGGTGCCTATGGGGTGGTGGAGAAGGTGCGGCATGCCCAGAGTGGCACCATCATGGCCGTGAAG
Seq A exon
GTGAGCACTGTCCCCGACCCAGGGCCATCAGAACTGGGGGCACCTGGGGCTGCACCCCTGCCGCCCGGGCTCTGACCGCAGCCCCTCCCCCCGCAG
Seq C2 exon
CGCATCCGGGCCACCGTGAACTCTCAGGAGCAGAAGCGCCTGCTCATGGACCTAGATGTCAACATGCGCACGGTGGACTGTTTCTACACCGTCACCTTCTATGGGGCCCTCTTTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010576:ENSBTAT00000013983:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.1=76.3)
A:
NA
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCATTTCAGAGCTGGG
R:
CGGTGTAGAAACAGTCCACCG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]