DreINT0092536 @ danRer10
Intron Retention
Gene
ENSDARG00000099184 | map2k6
Description
mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
Coordinates
chr12:36447912-36450716:+
Coord C1 exon
chr12:36447912-36448025
Coord A exon
chr12:36448026-36450596
Coord C2 exon
chr12:36450597-36450716
Length
2571 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATTATTTTTCCCCTCTGCAGCGG
3' ss Score
9.87
Exon sequences
Seq C1 exon
AACTTTGTGGTGAAGGCTGATGATTTGGAGCAGATTGGAGAGTTGGGACGAGGGGCGTATGGAGTGGTGGACAAGATGAGACACGTCCCCAGCGGTGTAATAATGGCAGTAAAG
Seq A exon
GTGAGTTCATGCACACTATAAGCGTTCTGTTTAAAACATGTCAAAAGCTTTTGACATCTGGACAGTTGATTAGAAATGATCTGTCTGTCCTAGTTGGATCCTTCTCTTGAATTTACTATTGCGGTGCATGTTAGTTTTTAAATGAGTCATGAACTTGCTTCTGCGCGTGAGCTGTACTGTTCTCTGGAATCCACTTTTAATGGCATCAACATTTTGTTCCTCAAATGATAGAAGTAACATAGACTACATTTTGTTCTGTTTTGACCTCTTGGCTACATTTAAATGAACAATTTTGTCAATCTAAATTAATTGAATACATTTAAAGATCTGTTGATGTACTCAAAACCTCTGACTAATAGGCTAATATTTTTTAATATGTTTTTTTGTTGGGTATATCAGAGTAAATAATAACTCTCTGAATATAATTTAAATAATAAAGATATAAATACACATACACAAACACTGTAAAACCACATACTAGTTCACCAAACAAGAAAGTATCAGGAAAACACAAAATAAGTATATATAAAAATCTGATCATACACTAATAGGTATCATACACATACACAAATACATACATGCATAAATCAGCTTTAAGTTAAGTAAATAATATTCATAATAAAACTAAATAATTATAATAATAGTAATAAAACACAAAGAGTAGGAACAAAATAAATATAAATGTATAGAAAAACAAGCATTTATTAACTGCATTTATAAACAGTTATAGTTTATGTCTCCTTAAAATGTTCCAGAAAAGGGTTCCATATTTTCTGAAACTCTTGGCTTTAGTTTTATTGCAAACCAAACCTTTTCCATCCTGAGAGCATGTACAAAATTATAAACCCATTGGTGATAAGGAGGGAGAGCTGCTTTTTATAGGTTTTATAGTCTGATACATTGTTGTTTTTGCTGTATCTTTATTGTTTTTAGTATCTACAGTAACTAGTTAATGTCCTCTAAAATTGACCAGTTCTTTTCTTTCAATGCCATCTTTATTAACTTAATATTTAAATTTGTATTATACTTTTGAAAATGACTGAAAAAATAGCCAGGTTCAAGTGTTTGTATAATATATTTTTTTAATTCGTCCAATCCAATTGAAATTTCAATCCGATAGAGCTTAATTGGATCAATTTACTTGATTACATGAACATTCTTCTGTTCAACTGTAATTCAATTCAACTGTAAATCTGACTACAAATGGATTATTTGAATTAGTGCTAAATTGGAGACTCTGAAGTAAACACCCACTGGTATGTCTGGCAAACTTTTCTACAAAGTAAATGTGCATTGTGGTTTCACTGTGGTTTTAAAAAAGTACAAAACTATTCAAATTAGGCAGTTACTTTGTCCTTAAAGGTGCCATATTCCGCTTTGGTTTAATGGGTTAAATTGTTCCCTGACATCTAGATAGTAGGTCTATGGCTTTGATAAGTTTAAAAAATCTCCTATCTCCTAATTCTATTTTTTTTACCAGATTTGTTGTGGATAAAGGCTAAACTATAATTAAACTTGACAAAAGAGAGTGATAGAGATGCTGTATTTTGAAGTCAAAGAAAACACAGACAGGAATTAATATCAACCTCTGCATGAACATATGACATAAGTGATTTGACATTATTCAGCACACATGTTTGTTAAAACATATGCTTTAAATTTCACAATAAACATGATAAATTAACCAAAGATATAACTAAACATATCCTATGCCTCTTTGGAGTGGAGATGAATAAATGTGTAATCTGTAAATCTTTCATTTTCCGTCCTGAGGTGAGTTTGAAACATGTCTTGTGCTGTCTTTGCCCAGCAAAGGACAGTAAACAATTTGGGGCTCGCGTTTTACATAGTAAGTGAAATATACCCTAAAAATAATTAGGGGAGGAAAGCTATAACTTTGTTCTCACTAGAAAACGTTTGGCTTATTAAACACGCAGCCTGAGGCATGCATATTAATGATACCAGAGCTGCATTTAAGCTGTGTTTTCTTGATTGCTCGTTAGGTCCGGATGAATGACCTAAAGTTGGCTTACATGCAAACGTGGAGGGCATGGCCTATAAATCTGATCACAGTTTGTTTTGTCTTCTGATTGGCCTGTTGTCCACTGGGGTTTTACACTTGTGGAATTTACAAGAAAATGAGAAAACTGTGGTGTTTGAGGTTCACAGTATGCCCATTTTCATATACTGATCATTTATTAATCTACTATGCCTTGGTATACCCAGATTTTAATTATGGGGCAACTTATATTTCCATGACAACATTAGATTTGCTCAACCATATTAAAGTGCACTTCACAAAACTGAATTTATTTGATTAAAATGTACAGAAAAAATAAGTGTAATATTGTAAAATTATTTTAAATAAAATAAAACAGCTTTCTATTTTAAAAGATTATAAAATGTAATTTATTCCTGTGATGGCAAAACTGAAATTCAGCATCCTTTATTCCATATTAATGTTATTTTTTTTTTTTTGTGACTCTTATTCAATATCAGAAATTAACACTGTTTATTTGAAATAGAAGATTTATTTATTTTTTATAACATAATTATTTTTCCCCTCTGCAG
Seq C2 exon
CGGATCCGGGCCACAGTAAACACACAGGAGCAGAAGCGGCTGCTAATGGATCTGGACATCTCGATGAGAACAGTGGACTGCTTTTACACCGTCACCTTCTACGGGGCCTTGTTTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099184:ENSDART00000171268:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.1=76.3)
A:
NA
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]