GgaINT0126846 @ galGal4
Intron Retention
Gene
ENSGALG00000004370 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr18:8282609-8284443:+
Coord C1 exon
chr18:8282609-8282722
Coord A exon
chr18:8282723-8284323
Coord C2 exon
chr18:8284324-8284443
Length
1601 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TAAACTGCTTTGTGTTCCAGCGC
3' ss Score
8.58
Exon sequences
Seq C1 exon
AACTTTGAGGTGAAAGCCGATGACCTGGAGCCCATCTCGGAGCTGGGACGAGGTGCATATGGGGTGGTGGAGAAGATGCGGCACATGCCTAGCGGGCAGATCATGGCAGTGAAG
Seq A exon
GTAGAGTGAGCCTCCGTGCTTTCTGTGTGTGCTGCGTGTGGACACGGCCGCGTTCTCACCCTGCACGTTTCTAATCCCACTCGTTCTGATGCATGCCTGACCGGGTCGACTTCTTTCCTATTGGAATCTTCTTTCTTCTCGGGGCAAAGAGTGCCGATTCATATATTCAGTAAATTCAGGCCCAATTTAACAAAAAAATGGGTGTGTTGAAGGAGAATGATAGGCAGTGTAGCTCAGGCATCACGGTTCACCTGGGTAGCAACATGACTGTCTTTGCTAGGATTTTAGAAGCAATTTGCCATCATTTCTTTAAAGTGTGCATGTATTTTCCTAGCATGAAAATACCCTCAATTCAGACCCCTGCACAATACTTATAAAGAAGACTGTACTGTAAATTCAGTTGCAGTTCAGATCATTTTCTTCAGCCAGTACTGCTTTAGTTTCTTTGGAACAGGGAATTGTTGTTGGCTTTTCTTTTTCCACATTTTGTCTGCTGCAGTGGGGTCTTGGTTCACGACAGGTTTGTTGATGCTATTATGAAAAGTTTTCATAACAGCAGCTTTGACTCATAAGCCTGCAGCTTAAGGAAATAGTCATGGGAAAATTTGTACCTTGGGAAAGGCCAATTTTTACAGGGCTGAGTTTTAGCTCAAATTTCCTTTCAGAATAAGAAAAAAGGCAAAAAAAAGATGCAGAACTGGAAGCTATGAGCAAACTGAAAGGAAATTCTTAGCTCCTCTGTTGCAACTAGACCTTGCTGTTGATGCTGGGATGTGTCTCAGGGCCTCCAAGCTCTGCATTTTCTTTTCTTGTTCACCATACTGCAAAAGACCTCTTTGAGAATAATGGAAGAAGTGAAGAAGGCATGGCAGGGACATTAAGGCTATTGGTTGCATCTGCAGATCTGTATAGAATCATAGAATCTTAGAATTATAGAGTCAATAAGGTAGGAAAAGACAACTAAGATCATCTAGTTCAACCATCAACCCATAACAGCCATGCCCACTAAGCCATGTTTAATTCCGTCATTACTGATCTTGAGTGGCTTTGGCCAAGAAGCCTAAATGCATGTGTGATGTGTGTTTTGAGCCCTTTCGTAGTGTTTCCCTGCTGAGGAGCTGCAGGTGTTCCACATAGATGACATCTCTTCCCTGGGAGACTGGGAAGTGCCCGCTTCCCAAAGCCATGAGGAGCCCATGGTCTTGGGCTCTGGGAATGGAGCTGTCTTATCCCAAAGTCTGCTGATGGAATAGATGTGCACTACAGCTCCAAAAGTCACAGCTTTCCACCAGCCTAGAATTTGACTTTCTGCTCCCTTCTCCTCTCTTAACTCACAATGTCTTTTGGTTGTTGCAAAAGAGGGTGACATTTGTAGGGAAGAGCAAAACCACCTGTATTTTGGGCTGAGGTGAGGAGACCTCTTCATCCACCATTGCCTTCTGTGGCATTTGGGTGTCTGTGCTTGGGATGTGCCAATGACAGAGGTGTGACAAAGAGTAAAGGCACAATGTCAAGACATGGTGGCCAGCCTGGGCACCATCAGCTGCAGCAGCATGGTGCAGAGACGCTGCCAGCCAATGCTAAACTGCTTTGTGTTCCAG
Seq C2 exon
CGCATCCGAGCCACGGTGAACAGCCAAGAACAGAAGAGGTTATTGATGGATCTGGATATCTCCATGAGGACGGTAGATTGCCCCTTCACCGTCACTTTCTATGGAGCACTTTTCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370:ENSGALT00000006971:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.1=76.3)
A:
NA
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGTGAAAGCCGATGACC
R:
CTCTCGGAAAAGTGCTCCATAGA
Band lengths:
230-1831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]