GgaINT0126846 @ galGal3
Intron Retention
Gene
ENSGALG00000004370 | F1NVF2_CHICK
Description
NA
Coordinates
chr18:8019553-8020204:+
Coord C1 exon
chr18:8019553-8019666
Coord A exon
chr18:8019667-8020149
Coord C2 exon
chr18:8020150-8020204
Length
483 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
GTTGGCTTTTCTTTTTCCACATT
3' ss Score
1.59
Exon sequences
Seq C1 exon
AACTTTGAGGTGAAAGCCGATGACCTGGAGCCCATCTCGGAGCTGGGACGAGGTGCATATGGGGTGGTGGAGAAGATGCGGCACATGCCTAGCGGGCAGATCATGGCAGTGAAG
Seq A exon
GTAGAGTGAGCCTCCGTGCTTTCTGTGTGTGCTGCGTGTGGACACGGCCGCGTTCTCACCCTGCACGTTTCTAATCCCACTCGTTCTGATGCATGCCTGACCGGGTCGACTTCTTTCCTATTGGAATCTTCTTTCTTCTCGGGGCAAAGAGTGCCGATTCATATATTCAGTAAATTCAGGCCCAATTTAACAAAAAAATGGGTGTGTTGAAGGAGAATGATAGGCAGTGTAGCTCAGGCATCACGGTTCACCTGGGTAGCAACATGACTGTCTTTGCTAGGATTTTAGAAGCAATTTGCCATCATTTCTTTAAAGTGTGCATGTATTTTCCTAGCATGAAAATACCCTCAATTCAGACCCCTGCACAATACTTATAAAGAAGACTGTACTGTAAATTCAGTTGCAGTTCAGATCATTTTCTTCAGCCAGTACTGCTCTAGTTTCTTTGGAACAGGGAATTGTTGTTGGCTTTTCTTTTTCCAC
Seq C2 exon
ATTTTGTCTGCTGCAGTGGGGTCTTGGTTCACGACAGGTTTGTTGATGCTATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370:ENSGALT00000006971:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.0=76.3)
A:
NA
C2:
PF0006920=Pkinase=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]