BtaINT0089094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010639 | MAP2K7
Description
mitogen-activated protein kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6847]
Coordinates
chr7:17888927-17892029:+
Coord C1 exon
chr7:17888927-17888984
Coord A exon
chr7:17888985-17891887
Coord C2 exon
chr7:17891888-17892029
Length
2903 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGGTTCTCACCACCCCCCAGCCC
3' ss Score
5.04
Exon sequences
Seq C1 exon
CCCCATCCAGTTATTGTGATCACTCTAAGCCCTGCTCCTGCCCCGTCCCAACGAGCAG
Seq A exon
GTACCAGCCTTTTTATCATCGCTGCTTGAATCTCTGCACCATTGACCTAACCGCTGCCCCAGCCGCAGAATGCCATCCCTCCTCCCCACCCCGTCATGCTCCGTGTGTGCGTGTGCATCCCCCCATCCCACCCTCACTCTCTCCAGCCACATGGTCAGTGTCTGGCCCACCCGGCCACTTCCTCCGTATCCTGTCACCTCCCGCTCCTCTGTTCCTCTCAGGCTCAGGTTTGGACTCTCCACAGGAGGAAACAGACTCCCTCACCTGCCAGGAGTCTGTCGCCTGCTGAGGGGGTCCCGAGTGTCCGTGCGTGTGCCTGCAGGCGTGTGTGTGTGTGTGCGTGTGCATGTACATGTATGTGAGTGGAGGGAGGGAAGGTTGGGCTCCCTACCTGCCGATCCACTTCATCAGCTCAGCGGACCCATGTCACCCCCCACCCTGTGCTGAGCAGTGCTAGGCCTGGACTGAGCCTGTCTGTTCCAGGGGCTGGTGCTCCCCTGGGGGTGGGAGGCCGTGGGGGTTGGGGGGTCCTCCGGGCAGGGAGAAGTGGAAGAGGCCCCGTGCCTTGGAGGAAAGGCCCAGTGAAGCAGGGTCATGGATTCTGCAGGGTTGGGGGATGGGGGGGGGGGTGCGGTGGTCGGGAAGCCTGGGGAGAAGGTGGCATTTGAGCAAAGTCTCCTGGGAGGTGGGGAGCACAGGAGTGGAAGTAGAGGAAACAGCCCCTCAGGGCCCAAGAGGCAGCCAGATGTGCCTGTGGGGAAGGTGGGGGATGGGGGGCCGGCTGGCCTCATTGATCCTTGTGTGTGGAATAGGACTGGGTTGGGAAGTGTGTGTGTGTGTAAGAACATGAGGGAGAGTTGGCTCTGTTGGGGGCCTTGTGGCGTGTGTGTGTGTGTGTGTAAGAACATGAGGGAGAGTTGGCTCTATTGGGGGTCCCGTGGCGTGTTGTCTGCACGTGTTTGTGGGTTTGTGTCATGCCCTGTGTGTGTACGTGTGTGTGCTCACTGACAGCCTGGCAGGCTGCATGCTCCACCCCACCCCACCGCCCTGTGTCTTCTCTCATCCTTGCTCATTCATCCTCCTCTTTTTTCTCTCCCCTTCAGTCTCTTGCTCTCATTTGGCCTTCCTGACCTGCCGTGGGCCCGGCACCACCTGTGTGATCTCTGTTCTCAGGGCCTTTGTATACCTCCCCCGGCCTTACCCCCCTTAGCCATCCTGCACCGGCCCCTCTTAAACACCTGCCGTGCTTCAGTTTGTGGGACCGGCTGGAAGCCTCTCTCCCCCCACAAGCTGCCTTGGCCCCGGGCTCTGGGGGAGCCTTCAGAGGGCCCGGTGGACTGTGTGAGGGGTTGGGGGTGGGGGCGACAGGGCACAGAGAGGCCTGGGGAGGGGAGGGACGTGGTCCTCACCCAGGGAGCCTGCCAGGGATGCAGGGTCCCAGAGCTTGAGGGTCTTTGGGAGCCCTGGAGGGTGTCCAGCCAGAGAGGGAGGGTTTAGGACCAGACTTCTGGCCGTGGTAGAGCAGGGAGGGCACTGGAGGAGAGGCCTCTGGGCCAGTGGAGGGGACTGGGCTCAGCCACGTCCTCGGGCTCCCAGAGCTCTTCCATCACTCTCGCCATGCCCTCCTGGGACTGGCAGGCCAGCCTCATAGGTCTGCTCCTCGCTTTGGCTGCGACCAAGATCGTAGGCCAGCAGGGCACGAAAAGTGCCTGGGCGCCAAGAGCCACACTGCATCTGTCTGTACCCATTGGCCACTGGGCCCACGCCACCGGGCGCCTGGAGAACTTGCAGGGGAGAAGCTCCGCCCCCCGGCCCAGCTCCCAGCCCTCTCTCCAAGGGGAGGTGGACCTGGGGGCTGCTTGTAGCCTTCGGCCTCCCCAGCCAGGGGCTCCCTTCTGGAGGCCAAGTGCCGGGGTCTCTGAGGTTCCTGGGTTCTCTGGAGGGCCGTCCATCTTTTCCAGGGCCACTCTGGCCTCTGCTCCCACTCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGGCAGCTGGGCCCCAAGTCTCAGCTCCCATCTGTCTGTCTCCCACCCCCCCGTCCCCTAACGCCGCCTGCCCATCCTGGGGTGCCCGCTGCCTGCCCGCTGCCTGCCCGCCTGCCTGTAGCATGCCCAAGCTGTCCGCATGCAGGCTTCTGGAAAGAACCAACCTCCCCACCTGGCCTGGCCTGTCCCTGGAGCCCTGCCGGCCCCTGGAGGGGCTGGGTCACCTGGCTCCCTTCACCTGAAGGACACAGGTCCAGCCTGGGCTCCTGCCCTGGCCTCATTGGCCCCACCTCTGCAGGCCGGGCCGGAGGCTCACAGAGTCTGCTGGCCAGAGGGCAGCCCTCCCTGACCCTGAAACAGAACAGGCAAGGCAGCTGGAAGCCTGGGTCCCTCACCCACTCTCTCCCCAGTTTAGCATTGCCACTTTGTGGGGGTGGTGGCCCTGAGCCTCTTCCTGGGCAGAGTGGGGAGGAAGGGGCCCCAGGGTAGGGGCGGCCTACCTGCCTGAGATCCACTAGCAGCCTCAGGGCCTCCTTTCTCTATCAGGGAATACTTGGGGTGAACCCTCAGCCTCTGGGGACCACTCTTCCCCCACCAGCCCACTGCAAGCCCTTCCCAGTCAGGGGGGCTGGGAGAAAGCACCCCGAGAGTGGTCTAGGAGCGGGGCACTCCCTGTCCGCCAGGGCTGGGGGCTGTGCTGGCCCACCTGAGGGATACCGGGGAGGGAAGGATGGGGGCGCCAGGGCCTGCAGCTGGGGCCAGCCGGGAGCTAACCCCCTCCCCACCCCTGGTTCTCACCACCCCCCAG
Seq C2 exon
CCCTGCAGCTCCCACTGGCCAACGATGGGGGCAGCCGCTCACCGTCCTCCGAGAGCTCCCCACAGCACCCCACGCCCCCCGCCCGGCCCCGCCACATGCTGGGGCTGCCTTCAACCTTGTTCACACCCCGCAGCATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010639:ENSBTAT00000014063:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]