RnoINT0088914 @ rn6
Intron Retention
Gene
ENSRNOG00000001047 | Map2k7
Description
mitogen activated protein kinase kinase 7 [Source:RGD Symbol;Acc:1560043]
Coordinates
chr12:2550594-2555164:-
Coord C1 exon
chr12:2555041-2555164
Coord A exon
chr12:2550736-2555040
Coord C2 exon
chr12:2550594-2550735
Length
4305 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
CCTGGTTTTTAATTCCCCAGCCT
3' ss Score
6.01
Exon sequences
Seq C1 exon
ATGGCGGCGTCCTCCCTGGAGCAAAAGCTGTCCCGCCTGGAGGCCAAGCTGAAGCAGGAGAATCGTGAGGCCCGCAGGAGGATCGACCTCAACCTGGATATAAGCCCACAGCGGCCCAGGCCCA
Seq A exon
GTAAGCACGGCCGCGTGGGGGAGGGGCGGGCGGGGCNCCACTCNCANNNNGAGGCCCCGCCCATCGGGCNNATCCTGCCCCCGCTTCCGGGGCGCTAGCTCTCCTCCCCTCCACTCTCTACGCTGTCAGCTTGCAGGGAGAGGGTCACGGTGACCTGGGAGTCGGGTGGGCAGTCTCCAGGGCTACTCGGTCCCCACACATACCGCGGTCCTGAAGTTCACAGCATGGGTACCTGAGAGCTTAGTGTCTGGGTTCCCCTCACCCCCATGGTCGGCTCCCAGAGCCTTGTCACCTGCACCTCGCAGGCTTTCAGACCCGAAGCTAAGCTACTGTGACTACAGCCAAGGCTCTCAACTCTGCAAACAGTTATATCTCTTTTGATTCAGTGGTTCCACTCCTGCCGTTTCAGTGACTGTCAAAAGGTCCCTTCCCCCAGCAAACAGTCCACACACGTGCATGCTTGTCTGTCCACGTAGGTCACCTAGTCTTCATCTACATCTAATCCTTTTCGGTGAGAAGCTTCTTCCGTTTGACTTCTTTGATCATATCAGATGGCTCCTTAGCTGGAAGGACCTTGTCACCGGACCCAGCTGACTGCCTCCTACATACAGGGGTACCTCATATCCCTGTGACCAGCTAGTTTCACTATTGCTGTCTAGTGTGTCTAGCCCGCTGGAAACACATAACCATCTCTCAGCCTGACAATTTTGTCTCCTGGGCTCAAGTGACTGCTAGCACTACAGACACCTGTAATTAGTCTAGTTCCATCAAGTAGACACACACCTCCTTTCTGATTCCACCATCTTTGGGTCTGCCTCCCTGACATATAAGTGCTTCCCCTTTCTTTCTGTACACATATACGGTTTGTCCATCATAACCACAGTTAGCATCCTTGTACCCCAGATATCCCTGTCCCCAAATCATCTTTGCTGGAAAGAATCTGATTTTTCTCTCTTCTTGCCAACCTTCTCTCTGTCCCTCTTTGATCCAGCAGAATGTCTTCTTTATATCCTCTGTGATATAACCTTTGAGTATATATATGTTTTATAGTTGTCTGTGGGGTCACTATGGTAAGAGGGGAAAGGCAGCCTCCCATAGGAGAGAATTCTGTTCACTATTTGGTCGTCTTCCTGAAGAGGCATTCAGGATTCTCTCCATCTCTCCCAGCTTCTGGCCGAGTTCCATGTTTCCTTCCTGGGAGTCTCTTCCAGGACCTGGAGATACCCAGAGGTGGGGGATGTGTTTCATTGGATTCTGCCTAGGACTGAAGGCTGGGCCAAGACTTGGAAGGCCCCTGCTGGATTCTAGGGTGGTCCTTCCACGCCTCAGTATGGATGAGACAGTGTTGGGTATAGGGTTCTACGTGCCCTAAGAGCTGCCGGTCCGTAGAGCAGATTAAGACCTGGTCAGGCTAGTGACTGGCAGGCCTCAAGGAGCCCCCTGCAGGTGTCTGTGTCTGTCAGATCCACACCCCCTCCCACCATCCCATCTCTGTTGGTTTCTACCCATCTCTGCAGTTTGGTGCCTTGTGCCTCCCCCTCCTCTTCATTATGATTTGATTTCTTTTCTGTTGGACAAATCGGTTGTTTCTGTTGTGATTTATTGTGGTGTTTTTTTTTTTCTTTTCTTCCTTTCCCCATCCAGTTATTGTGATCACTCTAAGCCCTGCTCCTGCCCCGTCCCAGCGAGCAGGTACCAGCCTTTTTATCATTGCTGCTTGCGTATCTGCACATTGACCTAACCGCTGCCCCAGCCGCAGAATGCCATCCCCACCCCATGCTCTGTGTTGTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATAAAGTAGGTAGAGATAGGTGCACTGCTCTTACTTAATCTGTCTCAACTATGGAGTGAGTGAGTCGTCATTTGTACACTGTGTCTCAGGCCCAGGAACACAGCAGTAAGTAAAACAGACCAAGCTCCTGTACGGTGCTGAGTCTGCAGGACGGGGTCCATCAGTACACACGAAGCACAGTCCTGATGCAGTAGAAGAGTCCAGTGGGGTCTCTCAGAGAAAACCTATGGAGGATTTGGGATTTGAGCAAAAGTGTCCCAGGAGGTTAGGGGAGGCAAGACACCCCCTGCCCCCACCCCCACCCGCACACATAAGGACTCCATGCTAGGTAGCTCAGCTGTGCTGGTTCCTAGGTGTATAGTGTCCCATCTGCATAAGAGAAAGAGCACCTGTGTTGGCAGAAATGAGGAGAGCTGACTATTGGTGGTAGTGTGCTCCCAGCTCGTGTGTATACGTGGATGTGTGCATGTGTGTTCCGTGTGTGCTCCCAGCTCGTGTGTATACATGGATGTGTGCATGTGTGTTCCGTGTGTGTTCCCAGCTTGTGTGTATACATGGATGTGTGCGTGTGTGCTCTGTGTGTACATATTTGTCTGTTTGCATTTGAGTGTATGTATGTTGGGCCGGTAGTCTGCACACCTAAGGGCCCCATAAGTGGGCACGTGACTCCATGATCTGTCTTGCTTTCTCTCATTCATTCATTCATTTATTTGTTCGTTCATTCTCACTTTTTTCTCCCTCACTGACTTATACTTAATCTACTCTCTAGGCCTGCCATGTGGCTCTAATCCCCTCTAACTTCTGTTCTCAGGGCTTTTGTGTATCCCCCTTTTCCCATCAAGTTCATGCTTCAGAGAGTGGGGCCAGCAGCCTTTTCTCTGGGCCTGGAACAGCCCAGGAAGGCCTGGTGGTCTGTGTGGATCAGGGGGACTGGCAGGGGGCGGAGAGCTTAAAGGTGTGATCTTCACTCCAGGAGCTGAGATACCAGATAAAAGAGGATCACATGTACTCATGGAAGCGAGCTGTGCACAGTTCTAGTGAGTCTGGATACAGCCAGGTCCCAGCTACCAGGGCTAGAAAAGGACCTGGATATCAGTAGTAAAACCCATTAAGGACAGAGCCCAAGTTACTAAAAGGTGGACTGTGGGAAGAGGTGGTAGTAAAGATAAGTGTGGAGAAGTGGGTTAGAAAGTGGCAGGCTCCAGGCCTTCTGGGAAGTGATGCTTAAAGGGTGCTTGTTGCTGCTGTCCCAAGCTGAGCTCGCTATAATTCTTCTGGGGCACTAGGGCCCCTAAGTATGAGAGGCTCATGGAGAGCAGATGCTTCCAGGAGCTGTAGGGGGCTCATGGCCCCCACCTCTAGGCCAGAGAGACCCCCTAGCTCTTTAAGGAACGTCCTCTTAATGTCCCATATCCTCTGGCTGTCTCTACAGCACCTTCTCTGGGCAGCTGGGTCCCCAGTCCTGGCTGTTTTTCTGTCTTTCTCCTGTCATCCCACACCCTAACACTGCCCGCCCATCCTGGGGTGCCTGCTGCCTGCCTGCTGTCTGCCTGTAGCATGCCCAAGCCGTCCGCATGCAGGCCATTGGGAAGTACCAAGCTCCCCTCCCTGGCCCGGCGTTTTGCCCCTGCCCAGCCCAGCCAGCCCCGGGAAGAGCTTTGCCTTCTAGATCACCACTGATCTCTCTTCACAAGAGCTCAGGCTCAGCCTGGGATTCTGTTCTCGCTCCCTTGACCCCAGTTGTGCAGACCTGTCTGGGGTATACACAGACGAGACAGCTGGAGAGAAGGTGGCCCTCCCTGGCCTAGGAGTGTCCTCTAGGGCAAGACAGCCTGAGACCAGCGTCCCATAGCTACTGGCTCTTGTCATCCAGTGCAGTGTTGGTGGCCAGGCCAGGTTCTTTTTTTTTTTTTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTATCTTCAGATACACCAGAAAAGGGCATCAGATCTCATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACCACTGAGCCATTTCTCCAGCCCCAGGCCAGGTTCTTGATGGGTCTTCTGTCCCTCATGTGAGCACTGTGACCCTTCTTGAGCCTGCTTCCTGGCACTGGTGAGGGAACAGAAAGATGAGTCCCCTCACTTGTCTGCAATATGTACTTGAGGATAAACCCTCAGTTTCTGGGACTACTCCTCTCCTACCAGGCTACCCCATCTCCTTTCAGGTCAGAGGGGCAGGAGGAAGTACCCTGAAGGTGCCCCAGGGGGCGGGAAAGGAGGCCTTAGGTAGCAGAGCAGGACACTGTTCCAGCCTGGCCAAAGGGATACCGGAAAGGAGACGAGAGCACCAAGTCCTTGGTGGCCAGCTAGATGCTAACTCCTTTCCTGCCCCTGGTTTTTAATTCCCCAG
Seq C2 exon
CCTTGCAGCTCCCACTGGCCAACGATGGGGGCAGCCGCTCACCATCCTCAGAGAGCTCCCCACAGCACCCTACGCCCCCCAGCCGGCCCCGCCACATGCTGGGGCTCCCGTCAACCTTGTTCACACCTCGCAGTATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001047:ENSRNOT00000061821:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.799
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]