BtaINT0090365 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47852895-47858327:-
Coord C1 exon
chr2:47857928-47858327
Coord A exon
chr2:47852998-47857927
Coord C2 exon
chr2:47852895-47852997
Length
4930 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTAAACTATTTTTACAGTCC
3' ss Score
7.15
Exon sequences
Seq C1 exon
TGAATATGATTTTCGTTAGTCAGAAGCACTTGTTTTTACCCATGTAGACCATCCTTAGGAATTAAATATTGGTTATTTAATGTAGATTATAATGGGAAACTGATTTTTTCTACAATGGCAGATTTCAAGGACTTGGTTCCAAACTGAGCCGAAGCTTCCCAATGCATTTTGTACAGTCTGGGGAAAACTGTGCTGCATTGGCCATTTTTGAAGGCCACGATGCCCTGTAATACAAGGACATCATCTTATTGCTGATATCTTTGGGGAGTCCTAAGCAGACACAGAAAATGAATGGAGGCAAGGAGTGTGACGGAGGGGACAAGGATGGAGGTCTTCCAGCTATACAAGTTCCTGTGGGTTGGCAGCGTCGTGTGGATCAAAATGGAGTGCTTTACATCAG
Seq A exon
GTGAGCCCTTCCTATTCCCTGCATTATCTCCAAGTTTGCAGCCACCAAATAAAGAAGGTACAGCCTGTTCCTCTGAGAACGTAAAATATTGTGACTGGTAGCACCTCAAGTCAATTTGAATAAATGATCTTTGTGCTGGAAATATTGTGTTTTTATTTATATTATTTTGCAATATAAAACCTGCCTTAGGTTACAAGAGAGGATTTTTATGCATTATTTGTGTTTATATAAAGTGTCGCCCTGCTTATCTCTCTAACAAGGATAAAGAAAAAGATGAAGATTTCTAAAAGAAACCCATGAGCGTCATTACCACATTCGCAGGAGAATGTAAAATACTGAAAATAGACCCGATGTCTCCTGACAATATTATTGTCCTTCATAGTGCTTCCGCTGGCTACTCTGATGTAAGGTTGTGTTTTTCTCTATAGGCAGTTTCAATTACCAGTTTCTTAATGCCTGATATTAACTAAAAATAATTTACCTGTTTTTTCTGTGCAGTTTTTAATCTATTCCCTGCATATAATAATAAAAAAGAAAAAGTCATGATGGAGTCATCTCACAAGTAAAAATCATACAGATTACATGTAAATACTTGTTATTTTAAATTTTGATGGTCTTTGTTATGTTGAGCAAGTTGAATGAAATAACTGTTCGCAAGAACTTTTAGTCTTACTATTAAATAATTGGCACCTAAGTTCCTTACTTTGTAGTTTATTGGTAAATATGTGAGTAGGATACCATAAATCTTTCTCTGTGATGTAATTTTTTAAAAAGCTATGATGAAGAGAACTTTTTAAAAGATATCACATTGCATCATTAGATTAATTATGTTGCTTTCAGTTCATCATTATTACTTTTATTTGTATCTCAGCTTCAGTGAAATTCTTGTTTGTGCAAAGCTGTATTTATATAAATGAGGAATTTCACATGATACATACTCAGACAATTTTGTACTATAACATCTCAGAAGTCAGTTCAGATCCTGTCCTGGATTTGTTTGTTTGGTAGAAGTTATTTCTTGAGGTAAACTTAATGACCAACTGAAATTCTTTTGAACATCTTTTTTAATTTCTGTAATATTTAGGAGGTGCTCTGTATTAATTGAAGTGAAGGGATAAGAAAGCAGGGAACGTGGAGCTCACCCCATTAAAGATTAGATGGATGAGGACACGAGGGATAACTTTCCCAAAGTGTTTCTATTGCCAATCCTGTTACCAAACTTCCAGGAATACTTTATCAGTGTAATGTAGCAAGACACCGGTGTTGTGTTCCTGTTTACAGTTGTTCTAGTCTGTAAGGAGCAAGTGTTATATATTTACAACTAAGAGCAGTTAACTCCAAAAATCTTGATAATTTCAGTTTATTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTCTTCTTTCTCCGTGTGAAAGATAAATCAGCTTTTTAGGTTGCTGAGAGTTAAGGCAAATTCATTCTGGAAGTCTGTCAGTTGTCTTGCTCATGACATCCCAAGTCTGAGTAGACTTTACTGTTAGTATGAGTTAGTTTTAATTCTCCCAACCCAAATCTGCACACTAGGGATTATTTTGGAAACTAACTTTGCCAGATAAGCTAAAACACCTTCAGATAAATTAAACCCAGCATAGGTTTGCTTCATGTGTATGTGTAACTGGTTAACTTACCACTTGAACATATATAAGAGGCTAGTCCTCCTTCTATAGCTTCCTTTGCAATGTGTAGTTTGCTTATAATTTTTAGTTTAGTTTCCAGCTGTTCCTGCCTCAGGGTGGCATTGAGGCTGCACATTAAATTTCCCACCTGCTTCCAATCTTCTAAGCTTTATCTATGCCGTAAGACTTCTAACTATTTTTATGTTAATTATTACTCCCAGAAGTTAATTAAAGAGCTGCAACTGAAGGAAAGAGCCCAACTGACTGATTGAGAGGAAGTGTTTCTAAAGTGTCTGGAGTACTCTAATATTATAGAATTCAGGAATTCTTGTATTCAAGTTTAATTTACAATTAAATCCTTTAGGATTCATTCATAGACTTTCTTTAACCGTAACACATGAGACAGTTTCTTTTCACAATATTCTGGAATTCTTCACATAATAACTAGTGATTTTGTTTTATCAAAGCTACCAGACCTCCAAAACACCTTGCTGGCCCTCCCATTAGGTAGAACTCCAATCTGTAATATGGGAATTCTTATTCTTTGCATATCATCTGGAAAAAAGTGTTAGCCCAAATAAATGAATGAGTTAACAAAGTTGAGGATTTTAATTGTGATTTTTCTACATGCCTAAGGCAACCCAGTCCAGTGTTCTTGCCTGGAGAATTCCAGGGACGGAGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCACAGAGAGTCAGACACGACTGAAGTGACTTAGCAACAGCAGCAAGTCATTTATATGGTTGTCCATAAATAAAATATGAATTGCATTCTAAAGCAGGTTTATTTATAGACACCAAACTACTACCTGTATTTTTGTAGAAGCAGAATAGTCTACACCTAGTAGTGTAAAAGGTCTGTAAAAAGCAGTGTAAAAGATTGACTGGAAAAGGTCAATCCTCATCCCAATTTCCAAGAAGGGTAGTACCAAAGAATGTGCTAACCATCAGACAATCGCACTTATCTCCCATGCTAGTAAGGTCGTGCTTAAAATCTTGCAAGCTCGGCTTCAGCAAACCAAGAACTTCCAGATGTCCAAGCTGGGTTTAGAAAAGAAAGAAGAACTAGAGATCAAATTGCCAACATTCGTTGGATTATAGAGAAAGCAAGAGAATTTCAGAAAAACCTCTATCTCTGTTTCATTGACTACCGTAAAGCCTTTGACTGTGTGGATCATGGCAAACTGTGGAAAGCTCTTACAGAGATGGGAATACTAGACCATCTTACCTGTCTCCTGAGAAACCTGTTTAAGGGTCAAGAAGCAACAGTTAGAACCCTGTATGGAACAACTGATTGGTTCAAGATCAAGAAAGGAGTAGGACAGGGCTGTCTGCTGTCACCCTGTTTGTTTAACCTATATGCTGAGCACATGATGAGAAATGCCAGGCTGGATGAGTCACAAGCCGGAATCAAGATAGGCAAGAGAAATATCAGCAACCTCAGATATGCCAATGATACCACTCTAATGGCAGAAAGCAAAGAAAAACTAAAGAACCTCTTGATGAGGGTGAAGGAGGACAGTGAAAGAGCCAGCTTAAGACTAAATACTAAAAAAAAACTAAGATCATGGCATCTGCCACCATTACTTCATGGCAAATAGAAAGGGGAAAGGTGGAAGTAGTAACAGATTTCCTCTTCTTGGGGTTCAAAACCACTGCGAATGGTGACTTCAGCCATGAAATCAGAAGTTCATTGATTGCTTCTTGGCAGCAGAGTGATGACAGACTTAGACAGTGTGCTGAAAAGCAGAAACATTACTCTGCAGACAAAGATCTGTATAGTCAAGGCTATGGTTTTCCCAGTGGTCACATATGGTTGTGAGAGCTGGACCATGAAGAAGGCAGAATGCCAAAAAATTGATGCCTTCGAACTGTGTTGCTTGAGAAGATTCCTGAAAGTCCCTTGGACAGCAAGGAGATCAAATCTGTTAGTCTTAAGAGAGATCAACCCTGAATATTCACTGGAAGGACTGATAGTGACACTGAAGCTCCAGTATTTTGGTCATTTAATGAGAACAGACTACTCATTTGAAAAGTCCCTGATGCTGGGAAAGATTGAGGGCAGAAGGAGAAGAGAGTGTCAGAGGCTGAGACGGCTGGACGTCATCACTGATGCAATGAACATGAATTTGGGCAAACTCTAGGAGATGGTGAGGGACAGGGAGGCCTGGCATGCTGTAGACCATGGGGTCTCAAAGAGTCAGACATGACTAGGCAACTGAACAATGACAAGTAGTGTAATGCTCTGTTTACAAAATGGAGAGTATTGTTTCTGGAAATTTTATCAGAAGGCGTTAAGTGAAAGTTTTGGTAAATAGTCATAAATAAAAGATATTCTTGAGTGAAAAGTATATAATAATTTTAAAACATAATATGTATGCAGGTTGTAAGATCAATACGTTAATAATGAAAGTCCTAAGATAAAAATTGCCCATTTTAAACTAATCCTCATGTAAATAAACATTAAAGACTTAACCTGTCATCTGAATTAGTACCTAATGTATAGACTTAAATTTGATCAGTAATCACGTAATACTGACTTCTGTCACCCAAAGAATAGTAACATTGAGAGCACTACCCAGTCACCAGCTGTAAGGCCTGCAAGGCACTTTTCTGCCACCTAAAACTGTTTCCTCGAGATCCCCATCCTTATCAGTCCACCGTGACTCTTCACTAGAATTTGAGCTTGGCAACATTCTAATCTGTATTCAAAGAAACACATGAATGAGAAAGAAACAAGAGAGACTTGTTTTTACAGAGGGACAACTTGGTCCTAGAGCTGCAAGATTAAAGGAAAGAACTTGTTAGCCCAAACTTTCATAGACTTAGTGACTTTCTGGTTTGACCTCCAACACATTCCTAAATTTCAGTTTTTCTCCAACAGCTTTCAAAATAGATCTTCTGGTTCAAAATGATAATGATTACTTTCATGTAGTTTTCTTGTTCCTTCTTACCTACACTTTTTTAAGAATATCATTTTTCTCATCCTTACTCTGCTCTCGGTTGTCAAAGTACTTTTGTTTTTCTATGAAGATCTGTATTTTTCTGAGAAATATTTTGGTTCAAAAGAAAGAGCAATAGTGTTAAAGGCTATAATTTAGTAGCTAACATAATATTGACAAAGAAAATGCTTTTCCTTAGTAGGAAAATATTATCCTGTGAAGGACAGTGAGACTATAAATTATGCCTTTTTTTCATGTAATATGTGCAGTCAGAATTATTTCCTGATGTTTTTTTAAACTATTTTTACAG
Seq C2 exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGAGCAGGTTAAAACATACCTGCTTACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592:ENSBTAT00000061479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]