GgaINT0050072 @ galGal4
Intron Retention
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34160695-34165682:+
Coord C1 exon
chr7:34160695-34160807
Coord A exon
chr7:34160808-34165579
Coord C2 exon
chr7:34165580-34165682
Length
4772 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCATTTCTGTTTCTTTACAGTCC
3' ss Score
10.68
Exon sequences
Seq C1 exon
ATGAATGGTGGAAAGGAGTGTGACGGAGGGGACACGGATGGAGGGCCACCAGCAGTGCAAGTTCCCGTTGGTTGGCAGCGACGGGTGGACCAAAGTGGAGTGCTCTATATCAG
Seq A exon
GTATGGTTATCTAAAGTGGTTACTGTTTTTGTTTGCATTGTAGTTTTGCCAGAACATGTGGTAGATTAGTGACTTGGCTAGTTCTTATACTCAAAGAGTTCAAGGGCTTATTCTTTTGGAAGTACTAGATCATTCATTCTGTTGATATTAATGGAGTCCACTTGAGTTATGCCATTTGCATGCCTGTAGCACATATTCTATCATTACAAATCTAATATTACTTGGTCTTGAAAATTTGATATTCTTACTATACGTTTTGCTTTAGGCACGAATAGTTCTTTATTACTTACTATCGTCATGTGGATTTTAAAGCTGAGCAGTAGCAGATTTAACCTTACTTAATACCTCTATTATTGAAGCCTTTTACAATGAAACTAGCCAGAGGATTTCTTAGGTCACACCTGAGATAGATGAGAAATTCTTCTCATTGCCTTTTCCTTGCTCAGCACTGGCTTTTTATAAGACCATTTGCTGGTCATGTTCAAAGAAACAACCAGGCATTCAAACAATCTGTGGCAGATAAGATAGAGTGGGACCTTTTTCTGCCAGCAACAGGCCTTCAGCTCAGTTTGTGTGGTGCCATGCAACTTTATCCTGTTGTTCAGTAATCTTCTTTGCTGTCTCTTCCGGGTTTATGTTCCAGATCTCCACTGTACTTCTCTGGTTTACTTTTTCTCTTTTGAAAGGAAATTAAATGGTGTAATTATACTCAGTAGCTGTAGAAAACATCAGTCCATTTTAAAAACCAGGAAGGTTCTTGGTACAACACCACTGATATGCCTCAGCAGGACTGACTTCTACAGATTCCTCCCATTTCTAATTTAGGAAAAAAAAATACAGGAATGCAAGCCTAAAACTAAACTTTTAGATACTTTATTTATTTTCCTAGCTTATAGAATGTTTTGCTTCATCCCGGAGCAGCCTCAAAGAAATGCACTGAAATTACTATTAAATGACTGTGTTCAGACAAACATACTGAAAATTAAATCTCATTGGAAAAAGATCAAAGTTAGCTTTAACAAAATGTAGGTACATCAGGTTTACATCACATTAATGCAAATGATTATCAATTTATTATTATCTTATACTTATTCCGCTCTTCTCTGATTAAAATAACCACTTGTACTCAACATTTTATATATTAGCAATATGAAATTCTTTAATGAGTCTCAGCATACTCTAATTTCACACTAAACCACCATAAAAGATCAAATACATTCCAGGATTTCTTGTTTATATTCTCAATTGGTAGAATCAAACAAAATCCATGTCACTGATATGCATGTCAAAGATAAATAGCCTTCCCCTTGTATTTCTCATTATTGCTGTAATTTACTGGGCATCTGCCTCAGTTAAAAATCAATGAAAAAGAAAGAGTTGTTTGCTTTGTGGTGTTTTATGATGTTTTTTTTTTCCTTTCATTATTGTATCCAGACAACAGGACTTAAAATTCTTTGCTATTTTTATATGGCTAATGAGCCCACCTGTTTTTGAATTTTAGTTTCTACAGCTGTAAGAAGCAGGCCATAAAGCTCTTAAAGAAGTCTTACATGCTTAGAAACTAGTAAATTTGTTTATAATTCTGACAGTTATTTGCTCTTCTGTCTTCTTTTTTGATATGTTTTTTTTGTTGCTGTTGTTGTTTCTAGATATTTCTATCCTGAATTGCCTTATGAGAAACACTGTTTTAATTCCAGTTGACCCTGTTAATCAAGTTTACCAGTTGTCTTTTTCATTTTGGGGAAGCTGGTACTTTTTCTGCCCTCTTTCCACGTTTTATCCGTGTACTTTCTTTAATCCAACAGTTAGTTTGCTGGTGTTCCTCTGTAAGCCATTCTGATTCAGGGAAGTCTAGATGGTGTCTAGATGCTCATCCACATTCTTATTTGGTGAAAGGCATGGAGTAGGAAGTGATGGCTGGAAGGGATGAATGTCATCTAATCCAGTGTGGCATGTGAGCAGCACTCCATCAGGTCAGTTGCTGGTGTTGTTAGCTGCATCTTCAAGGATGAACTCTCCCTAAACTCTCTCAAGAAGCTGCTGTTGAGTCCTTCTAAAGGAACAACCACCCTGAAAATATACACAGCATTTATTGAAGGAAAGGAAGGCCAAACAATATTGACTCAAAAACTATCCAGAGGAAAATAAGTGTGTATATTAAGAATAGATGATCTCAGCTGAATAAGGACTCGCTGTATTTGTTCTTCTTTATAAAGCTTGCATGCTTTTTGTCAGCTGTCAACAGTTGCTTTCAGTTAAATCTATTAATTAGTTTTTATTACCAGGTAAAAGCACTGCTTTCTTAGTAACTAACAGTGCTGCTTGCAGATAATCTCTTCTTCGGGTTACTGTAAGCCAATAGCCATCAGTGGAATAAACTGAGAAAAGGTCTTTAATAGGGGGTATGGAATGTCTATTCCATAACTGTCAGTAACTGATGCAAATATGTAATTTGTTCTCTTGTATTTCTTTGGAGTCTTAGAACCCCTGGATGTCTGGAGTGACAAAAAAAACCTTCATAGTTTCTTACAAAGGAAGCTGTAGATTATCCTTTGCAGTACAGAAGCGTGAGGAAATCTGTTCACACAAAAGATGCTTTGCCATTGCATAGATCTGTGCAGTCCATAACTGGTGTGCAGCAGACATGATTTCTGGCATGAATCATTTGGGCTGTTTTGTATATCCAGATTTCATTGCACGTGCCCAATCCTTCTGCCCAAGAATCCAGCAGAGAGAAAAAAATGGGCCTTTTCTTAATTTTGGTATTTCAGTAGACAAATAACTCTGCGTATACATGCAGCAGGTATGGTGACTCCTGTAATGCCACAGGTTCAGTGGGCTGCTCTGTGTGCTCCTGGTAAGTATGGGTTATCCAGAGCTTGCTTTACACCCTCCTGTGGTCTTTGCAGTAGGTATATACCCTATGGGTCTGTTGTTTCCAGACTCCACTATCTCCTTGCACCCGTACCTGCATTTTCCAGGCAAGCTGTGCACCAGTAAAGCTTATTAAAACTACTTTCTTCTAGAAACAAACAAGAAAAAGAACTTTGATGGCATAGCTTCACTGGGTTCTAGAGGATGCCCCAGAGGGCAGTGGGCACGGCACAGCTCCCAGGGCAGCAGGCATAGCCCCATGCTGCCAGAGCTCAGGGAGTGCTGGGACACCAACCTCAGCCATAGGGTTTGGGTGGGCTGTGTAGAACCGGGGTTGGACTCGATGGCCCTTTGGGGTTCCTTCCTACTCAGGATATTCTACAAAACAAGCAGTAGCCATGGCTTCTGGATAAGTTTAGCTGCTGTGCATCAGTGGCTGCATTGTGGCACTGCAAGTAAAACAACATCCTAACTCCACAGCATATTCCCACAGATGTCATTTGAAATGAGCTTCTTAAACATCACAGAACTTGTGGTGTGTAGATGGGCTAGTAGAGAGCAAATGCCAGTCTGCAGTTCTCCTGTGGGAAGCTGTGGCCCCCCCAGGTGAGGACCTCACCTGTGCAGCATGGCTGCTCCGGTGTGCATGCTCAGATCAGGCTGCTGAAGGTTTGGCTCTCTGGCCTATAAATCATTCTTCTTCATGCTTCTACTGTTATTTTTAGATTGCTTTTACTTTGTTTATCCTCAAATGTCAGCGTTACACATATTCGACCTAAGTGATTCTCGCTAAAATAACCATTTTAGGGCAGATCTGGCAAGTATATCACTGAAACTGTTAACATAACTTTAAATGACATTTGCAGATGTTACTTTATAGATGAGTAAGTTCTTGTTGTGCATAATTAGTTGTTTATGCATTCGGTTTTAAGAATGAAAGTTCATCATAGTTTGGAATTTTTGACTCTTGGCTGTTTTCATCATCCAGACTCTTCCACTTAAGTTGTTTTTATTAAAATAAGGGCTTTTAAGGACCGGTGTTTCAGCCAGTCCTCACAAACGGTTGTATTCTTTTCCTGATGAGCAGTTTGGATGGCTGAGTAATGAAGAGCAACGTGAAAGTTAGAGGTTTCTGACGTGAGAACTTTTTTCATCTTATGAATTAGTGATTTTGCCATAACAGGATTTCCAATGTCCTATTTTTGGATGTGGAGATAATGATTTTCTGGTGGGAGCTAGAGAAATCCAAGTGCAGTTTATCAGAAACTCCCTGGACTGGCTTCTTAGGGCAATATTTCACACTTTCACTGGGAAGGCTGAAATCACAGCTGAATAAACTACACCACGTGCAACTAACAGACCCAGCCACAATACTTGTGTTACTATTCTCCCTTTTCTTTATGAGTTTTCTCATACTTCTTGAAATACATTTGTGATGTTTTCTTTATAAATTAGATTCCAGTCCTAGAAAGTAGAAGTGACTGTCGTGCCTCAACGGAACTGCAGGGATGGGATTTGGGGGTGGAGGTTTGTGGGGATTGCCCTCTGCTTGTGTGCTGCACTTTATAGGAGAGAAGATGGAGAAATCCATGTTAGCGCTGTTAGGCAATAGTTAAAGCTTTCAAGTACAATTGTAATGTGAATAGTAAATGTCAATGATCTCAATTGCTTTCTTTGCACGTTTGTTTTTCTGTGGTAAAATATTTCTTTAAAATGTTGCTTCTTTTTTCAGTGTTTTTGGTATCTTCTTAGTTCTTGACTAAAAGCAAGAAGTACTGTGAGACTAAATATGAAATCTTAGCTTTGTATCAAATTCTGTCAATGTGAGCTGTTAGAATGGTGGATAGAAGTCATGACCTGTCAAATAGCTTGAATTTATCATTTCTGTTTCTTTACAG
Seq C2 exon
TCCCAGTGGGTCTTTATTATCCTGCTTGGAGCAGGTGAAGACCTACTTGCTGACTGATGGAACCTGCAAATGTGGCCTAGAATGTCCTCTTGTTCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449:ENSGALT00000020351:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]