MmuINT0096261 @ mm9
Intron Retention
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49101062-49105761:+
Coord C1 exon
chr2:49101062-49101726
Coord A exon
chr2:49101727-49105658
Coord C2 exon
chr2:49105659-49105761
Length
3932 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTAACTATCTTTGCAGTCC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GCTATATCAATGGAATTTTGAAGACATGAAAACATCAGATGAACCAGCCTGCAACACCTTGGATTCCCATTGGAAAATGAAGTGGAAGCTTAAAGCATGTGGCCTTTAACGGCGGGCAGTACTGGAGACATTACCTGGCTGCTGGTGTCAGGACAGACCGGTGTCTAGATAGTCGAGGTTATTTTAGTCCAGTATCAAGGTTCAAGGCAAAATGTGCAACTAAAAACTTTTCATCCCTTCCTCTTCTGCTTCAGACAGGTACCAGCATAGGTGAATTATGATTTTCCCTGGTTGAGAGTGTTTGGTTTTGCCTATGTAGACCATGCCTAGGAATGAAATACTTTTTTATTTAATGTAGATTATAATGGGGAACACTTTCACAATGGCTGATTTCAAGGACTTGGTTCCAAACTGAGCCCAAGTTTCCCCGTGTACTTCGTAGTCCGGGAAAACTGTGCTATGCTGGCCCAGTTTTGAAGGCCACCATGCTCTGTAATAGACGGATATCATCTTATTGCTGATATCTTTGGAGCACCCAAGCAGACACAGAAAATGAATGGAGGCAAAGAGTGTGACGGAGGAGACAAGGAAGGAGGTCTTGCAGCTATCCAGGTTCCTGTGGGTTGGCAGCGGCGTGTGGACCATAATGGCGTGCTGTACATCAG
Seq A exon
GTGAGCTCTGGCTGACTCTTACTCCAAGCTGCAGTTTTCAGATTAAGGCAGGAAAAGACTGATCTTCTTTAAAGGAACACAGTGTTTTGACTGACAGCACCTAGCATAGACTGGAGTGAATGACCTCTGTGCTAGAAATACACAAGTATGTTTATTCTTTGCTGTTTAGCAATGTAAATTTCCTTAGATTATTGAGGAGAATTTTTATGTATTACTTTCATCTTTGTAAAGTTATCTTTCTGCTTCTCTGTGAGAATGATAAAGAAAATGCAAAGCTTTCTAAAAGAAATATAAACAAGAATACTATTTTCACAGGAGAATGAGAAACAGTGGAAATAGATCCGATATCTCTTTTTAAAAATCACCCTGCTTCAGAATACTCCCTCTAGCTTTTCTGAAGCTAATTAACTATTTTCACTGTTGGACTTCTTAACTTAAAGTAACTTGTACCTTTTCTAGCACATCATTATACTGGTGGCCTGGGTTTCAGTGTGGTTTTTATAACCTAGATTCAACACAGTTCTTCTGTTCTACAATGCTACATATATGTAGTGGGCATTTGGTGCCTGCCTGTAATCTTAGAACTTAGGAGAGAGGTGGGAAGGCCAGGGATTTAGAGCAGGCTTTAACTACAGAGTGAGTTAAACCAGTCTGGGATTCCTAAGAAAAACTCAATAAAAACCAAAAATATATGAATGAGATACTCTTTACTATATAAATATAAAAAATGGTATCCCATAACTCAAGAAGGCAGAGTAGATATGGGTTTGTTTGATTTGGGTTAGAAGTTTCTTGAGGTAAACTTAATTCCTTTCTTTGTCAGATACATTTCTTTGTTCTGTAATATTAAAGGTGTTCTCTGTTCATTGCAGTGAAGGAATAAAAAAATAGGGAATGTGTAGTCTAGCCCATGGAAATAAGATATACAATCACTCATGATTAATTTTCTCAAACTATTCCTACTGCCACCATTGTTCATATATAGCCAGAAATATCTTGTTACTAATACAACACTGCACATTATTAGAGACATGTTTGTGTTCATGTTGTTCAAGATCTATAAAGAAAAAAAAAGTGCATGCAACCTGGGCTAAGTGATTCCAAAGTTTTGATAACTACTCATGAAATCAGCTTTTCACATCACTGTGACCAAAAGTCAGGCCAAGTCTAAGAGTCAAAACCCAGATTAAGGTCTAAGAATTCACAGTGACCTTGTGGGTGAGTTTCCAAATCTCCCTAGTCTTGAACATCTAATAATCGTCTCAGCGTAATGTCTCCAAATCAAATCTGAACACCAAAAATTCTTAGAGAAGAACTAACCAGATAAGGTAAAATTAAAATGCTTTCACATTAAGTCAAGCCAGCATGGATCTGATCTGTTTGGCTGAGGCCAGTTAATCTCTGCTGGAACATTTGTGGGAAGTTAGTCCTTCTTCTGCTGCTCCTGTTCACACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACATGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACATGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACATGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACATGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTGCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCCCTGCACACAGCTCCCTGCACATGGCCATGCACACAGCTCCCTGCACACGGCCATGCACACAGCTCATTATTAGCTTAGCTTCCAGCTGTTCCTGCTTCGTGGCACAGAGGCTGCATGTTAGTTAAGTTTGCCACCTGTTTCCAATCCTGTAAGCTTTATCTGTGATTTAAGACATAACTATTTTTACATTAATTATTACTACCAAAAGTTAATTAAAGAGCTACAACTGAAGAAAAAGACTGAGCTGAGTGGTAGGGAAGTATTTTTAAAGTGTCTGGAGTATTCTTAATAGACTTTAGGAATTCTTCACTTTAGGCTAAATTTTACAATTAAATCCCTGTAGCTTGCCATCCATAAACTTTGTTTTAAGTAAAATATTAAGCAGTTTCTTTGGGTTAAACTTACTAATTCTTCATGAGAGAAAAGAAATATGATATATTTTAGTTACACTTTTTAATTAAGATTATCAGGCCTACAAAGGCATCTGTGGTGATGCCTGTCTGCTATGGTGAAATTCCAGTCTACATTGTGAAATTATTACTCTTTTATGTCATCTAAATAGATCACTCAGCTAAGATGGAGAATTTTTTTTAGACCTTTTCTTTGTGCCAAAGTCACTTGTATAATTTTTTATGAACATATCTTAACCTAGCCCATTTCAAATGCTGCCTGTGCTTCTGTGAGGCAGAATAGACTATCCAGGAGTGACGTTTTGCATAGGAAATGGTATTTTTTTTGGATGAATAAGGCTTAAGGAAAGGTTTTTCTAAAGAGTCACAAATAAAATATATTCTCTTAATAGATACAAATTTTGGAATGCATTTATGTTGTAAAAAAAAATCAACCTACTAATAAAATATCCTAAAATACAAACTTAGTTCTTAATGTATAGACTTAAAGTGACTCTTTGCTTTCTTATTTTACTGACTTCATGGCTGAAAACCTGAGCATGGAAACCTATACAGCTCTTTGTGACACCTAACACTGCATTTCTTCAAAAATTTACCATCTTCTGTCGGCTCTACCTAGTACCTCTTTCCCTTCCTGTCAGTCTCTCTGTATTCAGTGGAATTTGAATTGGGTCACACTTATTCATCTTGAGAGATGCACACAGAGGGGATGGGAAGAAGTGTGGCTGGAAGCTCCTCTGCCTCCACACAAACGGGCAGCAGACACAGGAGAAATATGCTGCCTCCAGCTTCTCTGTGCTTTAGACTTTCTGGTTTGAGACTCAGCATGCTGCCATTTCACTTTTCTCAACCAGCTTAAAGCAGATCTTATACTTCAGATGAACAGCATTACTTTCACAGACTTCTCCTCTTCCTTTCTTACCTGTTGCTGTCCTTTGCTAAGAATAGAAGTTTACCATCTTCATTCCCAAATTTTCAAAAAATACTTTGTTTCATTTTCTATGAAAAATAAGTATTTTCCTGAAAAATATTTCCATTCCAAAGAGATACTTTTAACATCTGTAATTAGTACCTAACATGATATTGGAAATAAAATGTCTTTCCATACTAGGAAAATAATATCTCATGAAGGGCCAATAAGTCTATAAATTTTACTTTTTATTTTAAAAAAGCATATACATTTATATATGTAGTCAAAATTATTTCCTGATGTTTTTTTTTTAACTATCTTTGCAG
Seq C2 exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTCACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-Mbd5:NM_029924:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: