BtaINT0091451 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45037822-45038518:-
Coord C1 exon
chr7:45038435-45038518
Coord A exon
chr7:45037949-45038434
Coord C2 exon
chr7:45037822-45037948
Length
486 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTGCTTGCTCTATCTGCAGGTG
3' ss Score
11.95
Exon sequences
Seq C1 exon
GGCGCCGGGCCAGCCCAAGATGGACCACCTGCGGAGGCTGCACCTGGGCGCCTACCCCACGGAGGCCTGCAAGGCGTGTACCAG
Seq A exon
GTGAGTGGCTGCAGGAGATGCCATTCCACTCCGCCACTGGCAGCTTCCCAGCCGACGGGCCAGGGTCCCAGGATTGTGTCTGTCTGGGGCTCCTGAGTGGGTATCCCTGGCGGTCTTGATAAAGGGTGAGGCCGAGGTGGGGGGTAGCAGCGAGCGGCTGGCCCAAGCCTGCCTTCTTGGGGCTCCCAGTGGTCTGACAAGGGCAGAGATGGAGGAGTGGCCGCCTCCGCGCTGCTCGTGCACATGGGGCCTCGCTTGCTGCCAGACGACCCCAGGGTCACACCACTAGGCTTGGCCCAGCCTCTGTCCACTCAGGGAAGTGAGGGGTGGTATTGAGTGGGGACAGAAGGATATGGAGGAATTAGCTCACTGTGTGGGGTGTAGGGGTGCAGGGAACACGATCCTGAGGTGGAGTAGCATGTGCCAGGCCCTGTGGCTACAGCCGGCCTGCCTGGCACCCCACCCACCTGCTTGCTCTATCTGCAG
Seq C2 exon
GTGCGGCTGCGTCACCATGCTCAAGTCGCCCAACAAGACCACCGCCGTCAAACAGTGGGAGCAGCGCTGGATTAAGAACTGCCTGTGTGGGGGGCTCTGGTGGCGCATGCCCCTCAGCTACCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217:ENSBTAT00000064681:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(3.9=100)
A:
NA
C2:
PF116353=Med16=PD(4.9=81.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAAGATGGACCACCT
R:
GGGGTAGCTGAGGGGCATG
Band lengths:
198-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]