RnoINT0091115 @ rn6
Intron Retention
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12631525-12631969:+
Coord C1 exon
chr7:12631525-12631608
Coord A exon
chr7:12631609-12631798
Coord C2 exon
chr7:12631799-12631969
Length
190 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AACAGTCCCTGGTTCCCCAGGTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GGCCCCTGGGCAGCCCAAGATCGACCACCTTCGGAGGCTACACCTGGGTGCCTACCCCACGGAGGAGTGCAAAGCCTGCACCAG
Seq A exon
GTGAGAGCTGCCAGCCATGGCCAGGGGCCTCCGCTTCCCTCCTGGGCACACAAGACAGCCTGCGATCTGTGGGGTAGGGGCTTGGGGAGGGCCTTGGTTGTGGCCTTGTGTCCTACCTGGCTTGAGCAGGCTAGGGTCTGGGGGCATACCGTCTCCCCCACAGTACAGGCAACAGTCCCTGGTTCCCCAG
Seq C2 exon
GTGTGGCTGTGTCACCATGCTGAAGTCACCCAACAAGACAACTGCTGTGAAACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGAGAGTGCCTCTCAGCTGTTCCTGAGCCACAGCCCGCCAGTCTGCGTATGTACAGCCACTCTCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315:ENSRNOT00000015257:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(3.9=100)
A:
NA
C2:
PF116353=Med16=PD(4.9=81.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCAAGATCGACCAC
R:
CAGAGAGTGGCTGTACATACGC
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]