MmuINT0097393 @ mm9
Intron Retention
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79357452-79358455:-
Coord C1 exon
chr10:79358372-79358455
Coord A exon
chr10:79358156-79358371
Coord C2 exon
chr10:79357452-79358155
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACAGTCCCTGCTTCCTCAGGTG
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGCCCCTGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACACCTGGGCGCCTACCCCACCGAGGAGTGCAAAGCCTGCACCAG
Seq A exon
GTGAGGAGCTGCAGCCAGGCCCAGAGTTCTGGGCGTCCCTCCTGGGCCACACCGGCAGAGCCTGGGATCTGTGGGGTAGGCAGCTTGGGGAGGGCCTGGGCTGTGGCCTTGTGTCAGACCTGACTTGGGCAGGCTAGGGTTTGGGGCATACCACCTTGCTCAGCAGTGCAGTACTTGGGAGAGTAAGGTGAGTGTTAACAGTCCCTGCTTCCTCAG
Seq C2 exon
GTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGACACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGCCTCTCAGCTGTTCCTGAGCCACAGCCCACCAGCCTGCGTATGTACAACCAGTCTCTGAACATTGACATTGCTGTGCTCACTGAGGCACAAGTACCCACCAATGGCCCCTGGGTCTGCCCCTTCTAGGGACATGCGGCATCTCTAGGGCCTGAAGTCCCATGGTCATATCCAAGCCAGTGTGAAGGAGCTGGGCTGTGTATTCATCCTTTAAAAGATCCACAGTGGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAACAAAAAAAAAAAAAGATTCACAGTACATAAAGCCCCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTTTCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTTTCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTTTCTTGTCCTGCTTGGGGTCGTCTGCCTCAGTTTTCTTTGGGTGCCGGTGGGAGGGGAAGACTGGCCCAATAAAGTTCTCTGATGCACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-Med16:NM_001163276:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(3.9=100)
A:
NA
C2:
PF116353=Med16=PD(4.9=81.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGAGTGCAAAGCCTG
R:
CATGGGACTTCAGGCCCTAGA
Band lengths:
296-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: