BtaINT0091671 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12738835-12739579:-
Coord C1 exon
chr10:12739451-12739579
Coord A exon
chr10:12738964-12739450
Coord C2 exon
chr10:12738835-12738963
Length
487 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
3' ss Seq
CCCACCCTGTTTCTCTCCAGGCT
3' ss Score
10.61
Exon sequences
Seq C1 exon
CTTGCCCACCTGGGTTCTGGGGCCCCGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGTTGGACCGGACTCTTCTGCACGCAGC
Seq A exon
GTAAGCCCCGCCCTCCAGCCTCCCAGCTATTTGGAATCCCATGCTGCAGCCTGCTGGCTGCCGTGGGCATCGTCCGGGCCTGCAGTGGAGGGAGGGAGGAGATAGGTGCCTGGCTGTGAGCTAACCACTTCACCCTCCACCCCTGGGATTGGCTGGAGAGGGTGGCTGGCTTCAGGGGATTGATGGGGCCCAATCCTGGAAGGTCAGGGCCATTAGGTACCCCAGCAATCACCAAGACCAGCCACTCCCTGGACAGGGGGCCCTGAGTGGGGAAGAGCAGCCTGTGGCTGTGCAGCAGAGAGACACCAGCCTGGCCTCTGGTTCCAGGGCACCTTTGTCCAAAGGACTCCCCACCCGCTTCAGCGTGAGGGTTGAGCGTGGAGTGGCTCGGTGCAGGGTCTCACTGGTCTTCACCCCGTGCTCAAAGAGAGAAGGGAGATGAGACGAGTTTGGTCCCAATGCAGATCCCCACCCTGTTTCTCTCCAG
Seq C2 exon
GCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.6=27.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGGTTCTGGGGCC
R:
CACAGTGTTCCCCGGTAAAGC
Band lengths:
246-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development