MmuINT0097636 @ mm10
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64690002-64691923:+
Coord C1 exon
chr9:64690002-64690130
Coord A exon
chr9:64690131-64691794
Coord C2 exon
chr9:64691795-64691923
Length
1664 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GACCTGTGGTCTTGTTGCAGGTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
TGTGTGCTGGAGGGCACTTCGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAATGGGACCTGCAGCCCCATCGATGGCTCCTGTCAGTGCTTCCCTGGGTGGATTGGCAAGGACTGCTCACAGG
Seq A exon
GTAAGCTGGCACCCCTGCAAGTGTCCCCCGTTCTCCTGCAGACAAGGATATCCGCCCATTTATTTCTTTATATTGTTTCTGTGTGTATGATAAGTGCCACAGCAAGGATGTGGAAGTGAGAGACCAACTCTCTAGCACCAGTTCTCTTCAGCTTTTATGTGAGTTTCAGGGATCAAACTTGGGTTCACCACAGGTTTGGGTGGCAAGTGCCTTTATCCACTGAGCCATGTCACTGTTCCCTGATCCTGAAAGTCCCATTTTATGCTACATCAAACTTGAGTTACTGGAACTGACCATGGATATGGTTACTGCAGGTTATTAAGGGCATCAATACTGCCATTAGTGCTGTGAATCCTGAGAATTATACTCCACTAGCATCTGCCTATAGAAGATGCAGTCAGGATATAGAGGAGGAGGAGGGAACAAGACCGGTATGCTTGAGTTTGTGAATGGCAAGGCTAGCATAGCCACTCTTAGAAGAAGGGGAACACCTGTGGGATGGCCCCCTGTGAGTGATGTCCTGAACACCTTAGGCCTTAACATGGAGCTACAGTCTGATACCAAGGTAACAACCCCTTCCCAAAGGGGCCCCAGCCTTGGCCTAATTAATTAGCTCCTTGTCTAATGGGTGAGACACTGTCAGTACCTGTAAGGAGGTCTCAGTTAAATGGCCGGACCTGGAAGAATTCCATTTTGATGAAAGCCACAGGCTCCAATCTCAAACAGCACCTGAACCCAAAGACAAGACTGGCCCTGCCACCTGTGGAGAAGTCAGAGCCCTTGGTGTTACTCCACCCCTGTCCCTGTGAGTCCCTCTATGAATGGAGGTGTAGGAGCCCTTCGAGTAGGGCTGCCTTAAGTCATCCAAGATTAGAATAGGCAGAGTCTGGTCTTCATAGCAATCCCAGGGGTTGAGGCCAAGAGGAGAGCTGATTCTGTGACTAGTATATCAAGTCCCCAAAGGCCAAGAGATGCCCCTCTGGGTCTGTCCAGGTGTTCTGGCTCTGATGTGTACCCACCTCCCCTTCCTTTCCTCCTGCTCCTTTGTCCTGCCCTCCCCCTCTGCATCCCACCCACCCCACCCCCACAGCCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACTGGACTCTTCTGCACGCAGCGTAAGCCCTGCCTCCCAGACACTCCCAGTCATATGCTGCAGCCTACTGGCCACTTTGCGAATAGCCCTGGTTTGCAGAGAGGGAGGGAAGAGGCTGGCCCCAGGACCAGCCACACCTCAGGATCATCCAAAGTCTTGAGAGGGCAAGGCTATAAGGGTATCCCAGCAATCAACCAGATCAGACCCTTGGACCATGGGGAAGAAATCCCAGGGCTGCACAGCAGAGACCAGAGCTTGTCCTCTGCTGCTGAGGCCCTAGTTGCATGGATAACCTTGTCCCTACCCTCCTCCCCTTTAGCCCAAGGTTCAGTGGGTACAGATGTCTCTGTGGGCCTCGCTCGTCTTTATCCCATGCTGCGCAGGAAGCAGCAGACCAGCCTGGTCCCAGCAACATTTCCTCAGTTTTCCTGAGCCCACACCAACTGTGACCTGTGGTCTTGTTGCAG
Seq C2 exon
GTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466:ENSMUST00000093829:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=63.6)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(27.1=30.2),PF0005319=Laminin_EGF=PU(60.9=65.1)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGGGCACTTCGG
R:
TCTGTTCACAGTGGCGGC
Band lengths:
254-1918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types