RnoINT0091338 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70169462-70170162:+
Coord C1 exon
chr8:70169462-70169590
Coord A exon
chr8:70169591-70170033
Coord C2 exon
chr8:70170034-70170162
Length
443 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
3' ss Seq
GACCTGTGGTCTTGTTGCAGGTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACCGGACTCTTCTGCACGCAGC
Seq A exon
GTAAGCCCTGCCTCCCAGCCACTCCCAGTCATATGCTGCAGCCTACTGGCCACTTTGCGAATAGCCCTGGTTTGCAGAGAGGGAGGGAAGAGGCTGGTCTCCGGACCAGCCACACCTCAGGATCATCCAAAGTCCTGAAAGGTTACGGCTATAGGGCATCCCAGCAATCAAGATCAGACCCTTGGACCATGGGGAAGAAATCCCAGGGCTGCACAGCAAAGAGACCCAAGCTTGTCCTCTGCGGCTGAGGCCCTAGTTGCATGGATCACCTTGTCCCTACCCTCCTCCCCTTTAGCCCAAGTTTCAGTGGGTACAGATGTCTCTGTGGGCCTCACAGGCCTTTATCCCATGCTGGGCAGGAAGCAGCAGATCAGCCTGGTCCCGGCAACATTTCTTCAGTTTCCCTGAGCCCACACCAACTGTGACCTGTGGTCTTGTTGCAG
Seq C2 exon
GTTGCCCTGCAGCATTTTTTGGGAAGGATTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGGCGCCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGTTCTGGGGCTCTG
R:
GTTCACAGTGGCGCCCAG
Band lengths:
248-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]