DreINT0095003 @ danRer10
Intron Retention
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19179172-19183200:-
Coord C1 exon
chr18:19183082-19183200
Coord A exon
chr18:19179301-19183081
Coord C2 exon
chr18:19179172-19179300
Length
3781 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGA
5' ss Score
1.79
3' ss Seq
AGGATATCTCTTTCCTTCAGGCT
3' ss Score
7.74
Exon sequences
Seq C1 exon
TGGAAAATTTGGGAAAGCCTGCGCTGAGATCTGTCTGTGCACTAACAATGGAACCTGCAATCCTATTGATGGCTCTTGCCAATGCTTCCCAGGCTGGACCGGAGACGACTGCTCACAGA
Seq A exon
GTATGAAGCAATTTGTCTTTCTTTCTGTTTTCACCCTCTTTATTTCTCCCACTCTTTGTGTTTTGCTTTATCCCACTACTCTTTCCCTATCCATTTTCCCATCCATTTCTCTTTCATGGACGCTTCATGTCATAGTGCCATGTAAATCATGACCACGTCCATTTTTTTCTTCGCCAAATACCCCACAAGCACCGCTGATGGAGACCAACAATTTCCTCAATAAATTACTTGATAGCACACTCTCAATAATTTACACAGCGCTGGAGAGCGGCAATATGAAATAGAGACGAGAGCAACAATGTCCCGGAGAATTTATCGCTCCCTCGCTCTTCTCCCTCCCCTCTGGAGTTGTTAATCTAACGCTGTTTGCTGTAAGTGAAGGGGTGACGATTGGCTGTGGGTGAAAAAAGTGAGGGATTTCAATTATTAATTCCAAACAGTGGCATTTTCAGCTTAAACTGGACTAAATTAAGAGGATTATGCTGCAGCTGTGGCGCTCATTTCAGTGGGATTTCTCTTTATTTTTGGCTGTACCACATTTTATTTGCAAAACATGCCGATTTTAAATCAAATGCATCATTTTGTATATTTGTTGTGTCTATCAAGGGCGTGTAAATATGGGTTTAATATTAGGACTACACACGTTTGTTAAAGAGATAATTCACCCTAAAATTACAAATATTGTCATTATTTACTTAACCTCAAGTTGTTCCAAATATATATGCGTTATTTTGTCTTCTGAGCTGCTTAAAAGAAGATATGGTCGTAGTTTATTTTACAATGTCCTTGTTACGTGTACTCACTAAAAACAATAAATTAGGCATGATTACATGCAAATATTGCTAAACTTTCCCCTCGGCATAATCCTAACCATGTTGTAAATACATTTACTTAATTAATATTATTATTATACTTCCCAGCAGGCACACAACATCATTAGACGTTAAGGTCACACTTTATTTTGATGGTCCTTTTGTTTAATTTAAGTTACATTGCTTCTACATGCCAAGTAGACTGTTAGATTGGGGTTAGGGTTAGGGTTGGGGTTAGTGTAAGTTGACATGTACTTGCAAAATTTCTTAGAGTCAGTTAAATGTCAGTTGAAGGAGCATATCAACAAATATTTAGCAGACAGTCAACTGATACTCAAAAGGACCATCAAAACAAAGTGTTACCGATGTTAATATTAGGTTAGATGTAGTTTGTGATGTCAGGTGACCAAAATTCAATGTCTAACCAGCGTCTAAGGACAATGTCATTTTGACATCCAATAATAACGTTGATATTTGGTTGATTTCAGATTGTGTTGGAAAGTGACCAAAATCCAAACTCAAGCCAACATCTTAAACCAACATCATTCATTTATTCATTCGGCTTAGTCTCTTTATTAACCTGGAGTACACAGTGGAATGAACAGCCCTTCCAGTTGCAACCCATCACTGGGAAAACCAATGTCATATTAAAATCAAATACTAACATTTATTTGTCAAGTTGGCAACCAAAATCCAATGTCTGATAGACGCCATAGTGGTAATGTCCACACAACATCAAGCTGTAACGTCATTAGACTTTGATATTTGGTTGATTTTAGGTTAGACTTTGGACATTGGGTTCTGACATCAACCCGATTTTCATTTTCAAACAAAAAGCAATATCCCCATGACATTGGGGTACAATCTGATGTCATGTTGACATCTTGTTCCTTGCGAGTTATTTGTATAGTTACACTGTAACAAGGACAAAAAAAAAGTTCAAGAAGCCAATCAGAATCTAGTCCTAATTAAATTCTTCAGTACTTTTTAGAATATTTTTTAATATTTTATAAACAAATGTAGGTTTGGAACAACTTAAAGGGATAGATTGCCAAAAAAAAAGGAACTCTCAACCTAAATGTCCAATATAAGATAGATATAATATTAATTCATGAGTTGTTTTTTCTGCTGAATCCAAAAGAAAATAGTTTGAAAGATGTTGGAAACCAGAAACCATTGACTTCCATAGTTGGAAAACAAATTTAGTGGAGGTCAATGGTTTTAGTTTCCAAGTATAGCATCTATTCTATTGTTATCAACAGAAGAAATAAATTCAAAGTACAAGTGGAGGGTGAGTAAGTGATGACAAAGTTTTTGTTTTTAGGTGAACTATTCCTTTAACAATGAGTAAATTATGGCAGAATTTTCATTTTATTTGGGGTGTACTGTCTCTTTAAGGCCCATTCACACCAAGGAAAATAACTATATTAATAACAATACCTGTAAAGTTTAAATAAACACTCTAATTCTCTAATAATAGACCCTTTTCACATTTCCAGGTTTCTCAGTAGCGGAAGTCGTCATAAGTCGGAAAACTTAGAGCGCAGTAAAAGGGAGAGTACAACAAGGAATTTTTTTACAATCTTATTTGCTGAAATATAAAAGAAAAACTCCATGATAGTGTTATCAAGACATTCAGAAAAAAAAAAAAAAAAACGGATAATGGCAGCCAGAGGAGAAATTAACGACAAATTTACTCTCAGTCCCATAGACGCTGCATTAGAAACACCTCAAATTAAACTGTTTTTTTTTTTTTTTGTCATTTGAAGCAAAGATGATATAATACAGACATAAATACAAATTCATATGTTTTTTTATCTAAATATTAAAAACTTTCAAGGATTTAAGATGCTTATGACCGTTAAACGCGCCATAATAGGCTTGTGAAAAGGGTCTCTTAAGGAAAGGCCACACCACAACATCATTATCATTGGGATCACATTAAAAGCATTGACAGCCAATCAGAGTTCATCCTATTTTAAAGTGGCAGTGCACTTATAAATAAACGTGTATTGTTGTGATCCCACATACAGTTATTATTCTTGGTGTGAACGGGAGTTTAGTTTTCATTTGACGGTGTCTCTGGCTCCGCAGTTTGTCCCATAGGCCAGTGGGGCCCCGACTGCTTGAACTCATGTAACTGTCACAACGGAGCCCAATGTAGTGCCTACGACGGAGAGTGCAGGTGCAGCCTGGGCTGGACTGGCCTCTACTGCACACAGCGTGAGTCTCTCTTACACACACACATACACACATTCACAGTTATTAAATGTTCAAACGAGCCTCTATTACACCCTCTCAACCATATCTCACAGAAAATGACACAGTGACATCTGTTGGTAGTTCTTCAGAACTGCACACGAGTGTTGTGAAATCTGATGATGTTATGATGCCACGGAGTGGTTCTTAATAATAAATGCACGTTTTGGATTTTTTCCACGCCAGTCATTTAACTCATTATATGACCTTGCTCAAGGCTGAAATCAAAAACCATCAGCATCACGCCTGCAAATAAAAAAAAATCCCAGAATCCATCTTTCATTCATTACGTCAATCATTTCTTGATCCCTCCTCTGCTGCCACTCTGTTTGAAACTTTTCTTTTTTTTTACGATGGCAGTGATATGAACTCTTTCTTGAGGAGTGATGAAATCAGTTTGTGTTTTGCTGCAATGTTTGCTCCGGTTGCCTTGTTATCTTTAGCGCCCAGACTGTCTTTGCGTGTTTGTGTATTTATGAACTGTACCCGTGTTTGTCCTCAAATCGTTATTAGTGTCTTCGGAGAAGAAAACGCTGCCGCGCTAATACAGTTAAATTAGGTACATGATACAATAAATTCAGGCCATTTGCCTTTTTTTCCGAATGTTGTGGCTCTTTCACACTGGGTTTCCTGTTGCTGGCGCCATTAGTGTATACACCGACAGTCTGTTGTAGGTTAATGTGATGTAGCAGGATATCTCTTTCCTTCAG
Seq C2 exon
GCTGTCCCTCAGGGTTTTATGGGCGAGACTGTGCAGAGGTGTGCCGCTGTCAAAATGGAGCTGACTGTGATCATATCACTGGCCAGTGTGCCTGTCGGACTGGCTTTATTGGGACCAACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686:ENSDART00000147902:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]