BtaINT0091684 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12746362-12752362:-
Coord C1 exon
chr10:12752260-12752362
Coord A exon
chr10:12746509-12752259
Coord C2 exon
chr10:12746362-12746508
Length
5751 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGAGTCTGTCCGGCCCACAGGCA
3' ss Score
8.27
Exon sequences
Seq C1 exon
GATGGCACATTTGGGCTGAACTGCAGTGAACGCTGTGACTGCAGCCACGCCGATGGCTGCGACCCCGTGACAGGCCACTGCTGCTGCCTGGCCGGATGGACAG
Seq A exon
GTAACCCCCTCAACCACACCACCTTCCAGGTCCTGGGAAACTGAGCTTCTGGTGTTCTGCTGCCTTTTCTTGACTTTTCCTTCTTTTCTCCTTCACTTTCTCTTTTTATTTCCTAGGAATGCATCTTTCCTTTATCTCCTCTGGGCTTCGGTTCTCCATTCCATTCAAATTAACAAACGTTAACTGAATACCTGTTTTGTACAGACTCTTTTCGAAGGTCTGGGGACAGACCAGTTTTTAACAAGTCAGACAAAAGTGTGGGTGCTCAGTCTGTGCTTACAGAGGATATGGTGGAGACAGACAAGAAACTCTCGCCTTTGCCCAGGCTTAGACTCCTGGTCCCTACATGTGTCCTGGCAGTCCACCCCCTAAATATACTGCAAATCCATCCATTTTTCACCAGCCACTGTCACTCTCCTTGTACACTGAGCACCATCCCTCACCCGGCACTGCCTTGGCCTCCTTCTTGCCTCTGGGCCTCCCCTTTTGTCCAGCTGCCCCTACTCTGAACATGGTGACCAGATGCGTTCACGTCACACTGAGCCTCAGAATGCCTCAATGGCATCCCATGGCATTTATCCAGGCGCCTTCCAGTGACCTGGGGTCCACGTGGTCTGGCCCTCCCTAACTCCTCCACCTCTCTTATGCCCCTCCCATCGCTCACTTTACTTCAGCCACGTGGGCCAACTGTCTCCCTGCCTCCAGGCATCGAATGTGCATTCCCTCTGCCTGGATCACTCTTTCTCCTTCTCTTTACCTGATAATATCATCTCATCCATCATATTTCAACTTAAAGATGACTTCCTCTGGGAAGGCTCTATGCTCGGATACCACCACCTCTGCAACCTGGCCAAGATTATGAAAGAACTCCTTTAATTAATTCTCAGAATACCCTACAGTATTTTAATTCTCAGAATACCCTAACAGCAGTACTTACTTCAATTGTCACTGAACTCTGATTGAGTAACTATTTGTTTATTATCTGCCTCCCACATTGACCATCAGTTCTGTGCAGGCAGGGACCGATCCGCCTTGTTCACCACGGTATCCAGTGACTGTCACACACAGAGAAATGGTTAAGGACACAGAGCTGGAGCCAGGCCACCTTGGACAAGTCCTTTAACCTCTCAGGGCCTGAATCTTCCATCCATAAGATGCAGATAATAATAATCCTTATAACTACAGGGTCCTTTGGAAGTTTAGATGAGTTAATACCTGTAAGTGCTAACAGCACCTGGCACAATAGTAGGTGTTCAGTAAGTGTAAGCCACAGATACAATGTTAATAACATGTTGCATGAATGAACCCACTGGCCATTCCCAAGGTGGTGGACAGCAAGGAGTGAAAACTACAGGCGTTTTCACAGGTAAGAATTCACACCAGGCTGCTCAACAACCTCTGTTCTCCACAGCCAGAAAGTCAAGGACTAGGGGCATTGCTTCCTCTGTAGCATCTTCAATCTGACCCCCTTGTCCTGCCCCTTAGTACAAAGCTAGACTCCACCCTGGTTACCAACACCCTACACTCTTGGCTAGAGTCAAATGGAAATCCACTTTAATTTTTTATTGCCTTAATTTTGAGTGAACTGATAAGATTTTAATGACATCTGGTGCTTAAAAATTCTGTCTTTGATGGATAACCTTTCAGCAAGGTCTCTGCTGTTCTAAAACTAATTTCCCCAAACATGGTCCTGAAGTCATTTCAAAGGAGCAATTGATGTCCTGAAATTTGTTCAAGTAGAAGAAAACCAAGGAAAGATAGGGAGGGCTTGGGGTACAGGCCCAGCCTCCTACTCAGCGAGCCCTCCCGACCTACCCCTGACCACCTAGCCCCTGGCATACTGCTCGTCCCTTGAGTCAACACTTTTTAGAAATTATCATCATTTTGGCTGCACTGGGTCTTCATTGCTGTGTGTGGACTCTTCTTTGCAGCGTGTGAACTCTCTGTTGCAGCACAGGCTTTCTCTAGTTGAGACGCGTGGGCTTAGTTGCCCTGCAGCATGCAGGATCTTAGTTCCTGAACCAGGGGCCAAACCTCCCACGTCCCCTGCATTGCAAGCTGGGTTCCTAACCACTGGCCCACCGGGAAGTCCCTCAACACTTGTTTTTCTTTGCTTTAAGCAAGTGCATGTCCTCTCCCCTCACCCCCAGTTAGCCACAGGCTTCTTGACTGCCATGACGTCTAATTCACCTTGCCTTGTACATAGTAGCTGCTAATTCAATGTTTATTGAAATAAGTTGAAAGAAACTGGCCTGTAACCATATATGGATTTTCGCCTTGAAGTGAGGAGACCTTGATAATGATCTGCTCCTATCTCCTCCTGCTACACAGGAGGAAAAGGAGCTGTCCAAGGTCTCAGGACATTACTGCTAACAGGAGGCACAGGATTGCACTGTAAAGGGGAACCATTTCTTCATTCAACTAGCATTTATTGACCCAAACCATCACCAAGTCTTTATTTGGCAGCTATCATGTGGCTGGCCCTGAACTAGGCCCAGGAGTAAATGGCAGAATAATAGACCCTGGGCACCTATTGTGTGCCAGACACTGTCCTGGGTGCTAGAGATGCAGAAATGATGATGATGGTTTCCTGCCTATTGGGAGGACCTGGATAAAGAGTCAGAAGTGTCAATAAACCATGATCCCTGTCTCCCCAGGGCACATACATGAACTATTCAAATGATAGGTAGGGACAAAGCTGTATGCCACTATCAAATATATGCTTGAATCCCTGGGCAGACATCCAGGAAGGCTTCCTGGATGAGGAGGACCTAAAATATACATGAAGAATGTGGGCTGCTGAGTTGCTACTGGCCTTGTGATGTGAACTAGTGGTCACAATACATGGATTCTTAGTCTAGCTGCCCCCATCAATATAGATGTGTAGACAGCCCTGAAAAACAAAACCTTAGATTCTCTAAGGTAAAAAGGAGAGGGCCCCCAAGGGAGATTATTATCCCCAGACAGGGCCTAGAGAAGGCAGCTAACTGAAGACACCACGCCTCTTCAGAAGCTGTAGTTCTGAGAGTGCGCCTCCCTTTAGGCCAAGGCCAGCTGCTCTGACCACACCAGTGCAACTGACCTTTAGATTCTTCTTTCCACTTAGGTGCCAATGTCTGACGTTCCAAGGAGGTCTTAGGACATAAAAGAACCTCAAACAAGAGCCTCACCCACGGCACCAGACCTAGACTAGAATAATTGGCAGACCCAGAACCCAGTGGGCCCTTGCAGCCATCTGCAATCGGAGCATAATCACCTTACACCTATGATTCTTAATCTCCAAAAAAAAGGGGACACATTTTTGACATGAAAACATTTTGAGGATCCCAGACAGGAGAGTAGCTGTATTTCTAATGTCTACTGATTTGGGGAAAGCATGAGAGTGACCGGCTGCCGTGAGTACAGGGGTACTTTTGCATGCATTGTTTTATTAATCACAGTAATATCAGCTCATAGTGTTAGGAAAGAGCTGTATCTGCGTGTGATGCACGTGCCTTGGGCAGCCTAACAAAGAGCGCTTGATGCACAGGTGGGATCGGAGGCCCCTGTCCGACAGTGGAACTCCGCCTTAATCCAGTGTGCCTCCGGAGAGCATCAGGGCCCCTCGGCCTGCAGTCCGAATCTCACATTTTCAATATCCACAGGCACAAGAATTCCTTGAGGCACATCATGGCTTTTGATTTTGGGTTTTTTCTCTTCTAATATTTATTTAATTGATTGATGATTGCTTTACAATATTGGTTTGATTTCTGTCATACATCAACATGAATTAACCATAGGTGTACATATGTCCCCTCCCTCTTGAATCTCCCTCCCACCTCCCACCCTTTCCCACCCTCTAGGTTACTACAGAGCCCCAGTTTGAGTTCCCTGAGTCATATGGCAAATTCCCATTGGCTATCTGTTTACATATGTTCATGTATATGCATCCATGCTACTCTCTCCATTTATCTCAAACAGCTTTGTGTTTTTTCCTGCCCCAGGTTGCCCTTCAGTCCATTCATGCTATTTGCCACCTCTTGTGAACCTGAAACTCCACTGGGAGAGACCTCCATTGCGGAGTGAAATGTGACCACCGGATTCTCACTGGCATTTCCTGGGAGAATCTCCCCCCACCCCCTTCCCTCCATTGTTCAGTCGCTCAGTTCCACGCCAGGCTTCCCTATCCTTCACTATCTCCCGGAGTTTACACAAACTCACGTTCATTGAGTTGGTGATGCCATCCAACCATTTCATCCTCTGTTGCCCTCTTCTCCTCCTGCCCACAATCTTTCCCAGCATCAGGGTCCCTCCATACAGAGGCCAGTTTTCTGCAGAGTGGCATCAGAAGCCCCCACCCTGCTGTAGAATTGAGCTGTCACAGGAGGAAAGCCCAGGGAGGGATAGGGAGCTGGGCTGGACGGAAGCGCTGGAGGGGAATAAAGCCAGTTGATCCCCTCTCCCCCACTCTCTGCCTCTATTCTGCCCCCTCCCCTTTCCTGCCAGCCCAGGTGGGCTTGTACATTCCAGCCTGCCTCTAAATTGGTCCCACCGCTCTCCTGCTGCTGCTAGGGCCGACTCTGTTCACTGAGCCTGAATGTCTTCCTCTCACTTTCTTTCCCTTTCTCATGATCCCTGTCCTTATATCAAGCCAGACATGCTTTTTAAACTAATTCTGCTCCTCTCTGAGCCTCTGATATTCACCTTCCATGGCCAAGTTGGTCTCCGGGGCCCCATGGTCCATTCACCTTGTGCATGTCGGACTAGCAGCCTTTCTGCCTGGGAGGAAGCCCCTCCACAGAGCTGGGTATCCAGCCTCAGGCCTTTTAAAATTCCTTCTCAGCCTGCAGGCTGTAATCACCCCCAACATATATTTCCTTTCTCTCAACTCAAAAAGATTGTGTAGGCCTTGTTCTTCTTTCTGACAGATTCCATCCATCCCCCCTTAGGTCACTGTTTGTCAAACTGAAGGTCATTAAATCAGTTTGTTGGGTCACAACTAGCTTTTTTTTTTTTTCCTTAATGAAATAGAATACATCATAGTGCAGAGAAAATATCAGATTGCATCATAGTCAGTGACAGTAAATGTCATTTGCAGAGCACTGGTTTCTATTATTCATATGTATGCACATTTGATATAAAATACATATTACACTGAGGACTATGGTCAAAAGAATCTGAAAAGAGCCTCCCACTCTCGGGGTCACTGCCCAGGGGCTGGTTGGCTGGGGCCCTGCAAGGACCAATGGCCCCTGGACTAACATGGGTGAGCATGTAACTCACTCCTAGCTCGTGTAGCACCCCCATCATGGCACTTGCTTGCTCCGCTAACCTTTGTTCAGTCACTCAGTTGTGTCTGACTCTTTATGACCCCATGGACTGCAGCACATCACTAACCTTGGATTTCAGCTAAGATGTCAAAGGCAAAGGAGGCCTTTCATGATCTGACCCCTTCTGATTCCCACAACCTCATCTCTTGCTGTATCCCATCGAGTACTTTATGCTCCAACACACTACGCTATATTATCCTTCAAGGCATGATTCTCTCTCTTGCCTCCTGCTCTTTGCACATAGGATTTCCTTTACCTGGTCAATTCTTATTTGGTCTTCAGGACTTATACTTCAGTCATTCGCCTCTTCCTAGAAGCCCTCCCTGCCCATCCAGGCCTCTGTTTGTTCCTCCACATTTCCAGATGTGCTCGCCTCCCCAGCCCACCCCACACCCCTTTCTTAGTGCACCCTCACCACTGACTGAGTCTGTCCGGCCCACAG
Seq C2 exon
GCATCCACTGTGACAGCACGTGTCCCCCCGGACGCTGGGGCCCCAACTGCTCTGTGTCCTGCAGCTGTGAGAATGGCGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCGGGCTTCCGAGGACCCCTGTGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(65.9=58.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development