MmuINT0097633 @ mm9
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64529197-64533833:+
Coord C1 exon
chr9:64529197-64529299
Coord A exon
chr9:64529300-64533686
Coord C2 exon
chr9:64533687-64533833
Length
4387 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCTCTGTGTCTGGTCCACAGGCA
3' ss Score
10.37
Exon sequences
Seq C1 exon
GACGGCACTTTTGGGCTGAACTGCAGTGAGCATTGCGACTGCAGCCATGCTGATGGCTGTGACCCTGTCACAGGCCACTGCTGCTGCCTGGCAGGATGGACAG
Seq A exon
GTAACCTCTGCCCTGCCACTCACTTTGGGCCCTGGGTTTTCCCTCCTTCATCTCAACTGTTCATCTCCTATCATTTTCTTCCTTTCTGCTCCCAAATGGCACCTCCCCCTCACCTGCTCCCATTCAGTCTGGTGAGGAGATATTTATTAAGGACACGTTATGCTGAGGTTCTGGTCTCGGGGCAACACATTTCAGTGCTGACAGGTATTCAGCCTGTATATAGTGAACATGGCGCTTCAGAACCAATCCTTACATCTACCCCATAAACCATCCTGCTACACAAGGGGGATTCCTGCCACTTCTCTGCAGCCCACTGATCCCATGGGCCCATCTCTCATCAGACCCACCTTCACCTCCCAGGCTTCATGGAGGTGATGTAGAGTCTCAGTCCTGGCCAGATGCAGCACTACACACGTGTAATCCTAGCACTCGGGAGAGACAGGAAGTTCAAGGTCATCCTTGGCTACATAGCAAATTTAAGGCTAACCTGGGCTACATGAGACCTTGTCTCTGAAAAACAAAAACTGTAACAAAAAAATCCAGACTTCTTGCCATAAGGCTCTACCCGCTGTGATGTGGGCCTGCCCAGTTCCTCTTTCCTGTCCTATTTCTCTCTCAACGTCTACACACCTGGGCCAAAGTTAACTATTTTTATTAAAGATAGATCTCACTGTGTAGCAGTGTCTAGCCTGGAACTTACTGTTTATCCTGGCCTGGCCTTGAACTCTTTGAATCTTCACCTGCCTCAGCTGTTAAGTGCTGGGTCTGGTTTTATAGGCATGCACCGCCATTCCCTGCCCGAATTCCTCACCTCTGCACTGCCCTCCCCTCGTTCCTGTTAACCCCCCATCTTACCAACAAGTCCCTTTCCCTTCATTTAAGGAGCTGGGCAAGTGTTGTGCCAGTGGGTCACACCCCAGCTCAATAACTCCTTCCTATTTGCCAGGTTTCAAGTTGAAGGTCATTTGTGCATTACCCACCCAGGACTACCCGCTTATGAATCCTGGTGACCTAGACCCTTCCTCTGCAGCACCAGAACTGACCTTAGACTCTGAACTGAGTAACTGCTTCTATAGCAGTCCTAGGAAGAAATCTGCCTTAGGCATCCCTGCACCTACTGTCTGCCCCAAGCTGAGAAAAGGAAACCAGATGACTGATAGCTGAGCTCCAGCTGGAAGGCCTGGGCTTGTGAACTTCCGCAAGTTCTCCACTCTGCATGGCCTGGAGCCTCCATCCATAAAGCACAGAGAATCCTCACAGGGAACTTGGGACCACTCTGAGGTTTCAGTGAAGGGTACTGTTAAGGGCTCAGCACCTAGCACCCCGTGGTCTGTGACATAAACCACGGCTCAGGAAGCTCTCAGTGCAGTGCAGAGTCAGTGGCCACTGGCTGGGCCGACCCCTCTGGCTTCCTTCCTTCTGACAGCTGAAGGCTAGGGTCATTCCTTTACAGCAGTGGTTCTCAACCTTCCCAATGCTCTGATACAGTTCTTCATGTTGTGGTCATCCCTAACCATAAAATTATTTTTGTTGCTACCTCATAACTGTAATTTTGCTACCGTTAGGAATTACAGTGTAAATACCTGCGTTTTTTCAATGGTCTTTAGCAACCCCTGTGAAAGAGTTGTTCAAACCGCAAAGGGGTGGTGACCACAGGTTGAGAACCGCAGCTTTAGAGCATGCCAGGTCGAGGCTCCCCTGGCCTGCCAGCTCTCCCTCAGTAGGGACCAAAGCCCCGCCTCTCACCGGCCCTACATTGTCAGCTACAGCCTTGAAATGTTCTTAGTGTGCCCTGATTTTGATAGGGCTGACCTGATTTTAATGACACCCACTTTAATGATAGCATTTAAAGAATTCTGGCTTAGATGGACAGCCTCTCAGCTAGGCCTCTGCTGCTTCCAAAGCCTGTTTCTCCAAAGATGGTCCTGAAGGCTTCTCAGACAGGTGACTGAGGTTCGAGATTTGTCATGCAGAACAAGGCCAGGAAAGACAGGGAGAGTGAGGGGGCAGAACCGGGACCTCCCACGCAGCGAGCGCTCCTGCCCTGAAAACCCTGCTCACCTCCCCATCTGGCTTGGGCATATCCTCTGCCCTCTCATGACAGCTCCCCTCATGTCTTATTTACCTTGCTCTGAACATAATAGGTGCTTACAAAATGCTTCTTGAAGTCCATTGAAAAAAGTCAGCCTGTGACCACACATGGAAAGTGTAGAGATTATCATCTGCTCTGGCTCTGGTACTAGAGCTAACGAGTTGTCAGGATATTAGTGTCAGCAGGAGGGGAGGCGCAGGCCACATTTTTAGGAGAAGACTTTCACTTAGTGGGTAGGTCATTTAGTTGTGTACTTTTGAGACAGGATCTCCCATAGCCCAGGTTGGCTCAAACTTGCTATGTAGCTAAGGATAACTTTGAACTCCTGCATCTTTAATATTGCAAAAATGCCCTAGGTGGTGTCTCTGCTGTAGGGAGCAACCAGGTCACCAGGAATGAGTTTCAGGAAACCACTGCCCACTTCTTCACATCCCTGGCGAGGGTGGGGGTGTAGGAGACAGGTGTATGAGTGAAACAGCTGTAACAGGCAGCTACAGATGTTTGGACCCCTGGGCAGACAGGCTTCCCAGGGAAGGGCTTCCTGCTGTGAGTGCTGGCTTTGCGTATGGGTTCTTCAAGTGTGAAGAATATCATTAGTTCTACATTGTAACAACCCATCAGTGTGTGGGGGAGGGGCTCGTGGGAGCGAAAGCCCAGAGCTCATCCTCTAAGCGAGGAAGGGGGAGGCTTTTGAGAGGAAGAGAGAATGAATATGAATGGGATATGAAAATGATTAGACTATGTAATATACATATGTGGGCACATATAGGGAGGATGCATGTATGTGCCTGGGGATGCTGTCAGGAAGCAGTGTCCTCAGTTTCTCTCCCACCTTATTCACTGAGACAGTCTCAGTCAGACACAGAGCTCACCCATGTGACTAGTCTCACTAGGCACTTTGCTCTGGGGAATCTAGGTTCCACTTTCTGATGCTGGGTCAAGTTACAGATGGTTGTGAGCCATTGTGGGGTGCTGGGAGTCACACCTGGGTGCTCCCTCCCCAACCCCAGCAAAGCTGAGACACAAGTTAGGACACAAGAAGGGAAGCCTCCCCACCCTGGCTGTCTTACCCTATTCCCTCCCTCTCCTACAGGTGAGCCTGCAGTCTCAACTCCTCCAAATTGGTCCCACTGCTCCCCTTCACTGTTCGCTGGGTCTTCCCTCTTTGTTTCTCTTTCTCACAGTCCCGTCCTTATAACAAGGTAGACACGACTTTTAAACTAATCCTGTGCCTCTGGAGCCTCTGAAGCTTGCCTTCCAAAGACTGGCTGGTCTCCTGAGCCTGGTCCAGCCTGGAAGCTGCTCTGCCTGGAAGGGACCCCCCCCCCACCCCCCGCTAAAATTCCTATTTAGCCTCCAAGCTGAAATCAGCTCAGCTCAAATCTTCTTTGAGCTTGGGGGGACTGTAGATCTTGTTCCCTCTCTTATTGAAATAGTCCATCCATTTTCCCATAGGCTGCTGTTTGTCATGCTGAAGTTCATTTATTAGCATGTTTAGGGTATAGCTAGCACTTTTAGTTTCTTTTATACGTGTGTATATGTGATATAAAATATGTATTATGTGTGTGTATATTTGTACACATATTTGAATATTACAAAATTACAGTCTCATGTAGCTTTGGTTAGCTTTGAACTTTCTACATAGTTAGGATGGCCTTGCATTTATTTGTAAATTAAAAGGGGTATATATACATATATATATATATATATATATATATATATATATATATATATATATACACATACATACACATACATATATATATGTGTGTATATATGCATACATACATATACATACGGGGGAGGGCTGAATGAATGTGTATATATGATGGGCGGGGCTTGCATGTGCCACAGTGGAGGTCAGAGGACAACTCTGGACCTTCCACTTTTATGTGGCTCTCAGGGACAGAACTCAGGTCACTAGGCTTTCCTACTGAGTAACTTTAGCCATCTTACTAGCCTGACATGTTCTTGACGCCAGCTCAGCTGTGAAGGTGGAGACAACCGTCCTCATCTGGTGCTACCATCTCCTCTCTTGCTAGGCTCGTCAAGTAACGTCATGGGTCTACCCTTGTGCTGTGTTCGATTCCAAGCTATACTGACTTCTTTTGTTACCTGCTCTCTGCTTTTATGACAGCCATTGCTTGGTCAGTTCTTTTTGCCTTTGAGGACTCTGGAAGGGCATCATCTCCTGTCAGAAGCCCTCCCCACCAGCCCCACTTCTACTGGCTTTCCCTCCATCTCCCCCCTGCCCTCCTCCCTTTCCACTGACCTGCCTCTGTGTCTGGTCCACAG
Seq C2 exon
GCATCCGCTGTGATAGCACGTGTCCTCCAGGTCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAGAACGGAGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCTGGCTTTCGAGGACCCTTATGTCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-Megf11:NM_001134399:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(68.8=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: