BtaINT0091690 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50787220-50788201:+
Coord C1 exon
chr16:50787220-50787351
Coord A exon
chr16:50787352-50788072
Coord C2 exon
chr16:50788073-50788201
Length
721 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
CTCCTCTGTCCCCCTTGCAGCTT
3' ss Score
11.76
Exon sequences
Seq C1 exon
TCTGCCTGGACGACACCTTTGGCCCAGACTGCAGCTTGACCTGTGATGACTGCAGGAATGGGGGAACCTGCCTCCCCACGTTGGACAGCTGTGACTGCCCCGACGGCTGGACCGGGCTCGTCTGCAACGAGA
Seq A exon
GTGAGGCTGCTATGGGGGCGGGGCTGTGTGGGGGACAGGGCCCAGGAGCCCTAGGACCTGCATGGCACGGACAGTCCACTCCTCCTACCGTCCTGGGCAGGGGCCTCCTGGGTCCTTCCATTCACTCATTCCTTCAGGGTCTCCCAGCTGCCTTCTCCACGCCAGGTCCTCTTCTAGGTGCTGTGAGACCCTGGGGGCTCGCAGAGCCTGGTGTCTGCCCCTCAGAGATGTTTCGGTCGATGAGGGTCCAGCCACAAGCAAGCCAGCAGCTAACTGAGACAAAAAGGGGTCTGATGAAGAGCAGTGGGTGGGCAGGCCAGTCATGCTCGAGTCTCCGGGGGGACAGGTGACTTCCCCAGGCCACACAGCAAGTGGGCAGCTGAAGCACATTTGAACACTGCTCTCTCCCACCCTCTGTCCAGGGCATGTCCACTCCCTGCCCAGCGGCCCTCTAGTCTCAGAGGCCATAGTGACTGAAAGTGCTGGTTGAGAAGGTGGACCTGTTGGAGTTCAGAGGGAGAGGATGCAGGATTGATGAGTGATGTCTGCCATACATGTGGGCGGGGTCCCGGGGCACAAGTGCCGTTGGGTGCTGCTCTGGGAAGTTGCTTCTGAACTGGAGGCTTGACCCCCAGGAGGGTGTCTGTATCTCTGGAGGGGTTTCTGAGTGCAGGGTCCTTTTGCGGGCCGACGACCCTAAGCTCCTCTGTCCCCCTTGCAG
Seq C2 exon
CTTGTCCTCCGGACACCTTCGGGAAGAACTGCAGCTTCTCCTGCAGCTGTCAGAACGGCGGGACCTGTGACCCTGTGACGGGGGCCTGCCGCTGCCCCCCAGGGGTCGGCGGAGCCCACTGTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(66.0=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGGACGACACCTTTG
R:
TCCTCACAGTGGGCTCCG
Band lengths:
258-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development