GgaINT0134963 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:988676-989031:+
Coord C1 exon
chr21:988676-988807
Coord A exon
chr21:988808-988902
Coord C2 exon
chr21:988903-989031
Length
95 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTGTGCCCTCTGTCCCACAGCCT
3' ss Score
10.36
Exon sequences
Seq C1 exon
TCTGTCTGGAGGACACCTTTGGCCCCGACTGCAGCCTGACATGTGAGGACTGTCAGAACGGGGGCACATGCAATGTGGAGGGGACGGGCTGTGAGTGCCCGGCCGGCTGGAGCGGGCTGCTGTGCAACCAGA
Seq A exon
GTGAGTGATGCTGCACACAGACCCTCATGCAATCTTATTCAGAGCTCAAACCCACAGATGTGCATGCTGTTAAAGCTGTGCCCTCTGTCCCACAG
Seq C2 exon
CCTGCCCGCCTGGAACCTTCGGCAAGAACTGCAGCCAGCTCTGCCTCTGCCAGAATGGGGGTACCTGTGAGCCCGCCACCGGCACCTGCCGCTGCCCCCCTGGCGTGGCTGGGATCCACTGTGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(66.7=77.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGACATGTGAGGACTGT
R:
TCACAGGTACCCCCATTCTGG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]