BtaINT0091704 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50798220-50798688:+
Coord C1 exon
chr16:50798220-50798348
Coord A exon
chr16:50798349-50798559
Coord C2 exon
chr16:50798560-50798688
Length
211 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GCCTGCCTCTTTCGCCACAGCCT
3' ss Score
8.71
Exon sequences
Seq C1 exon
AGTGCCTCCCGGGGGTCTTTGAAGTTGGCTGCCCGCACAGCTGCGGGTGCCTCAACGGTGGCCTCTGTGATCCGCACACCGTCCACTGCCTCTGCCCAGCCGGCTGGACCGGGGACAAGTGCCAGAGCT
Seq A exon
GTGAGTGGGTGGCTCGGGGACCCATGGGGGAGGCCAGGAGGCCCCTCGGGCCCCTGTGGGGTGGCCTCCATCGTGCCAGAGTGTGGGGCCTCAGCAGGGTGGGCAGTGGGTAGGAGAGGGCAGGGCTGCGGTCTGAGCTCCCCAGGCCTACTGCCTCTGTCCGGGGAGCCGCCCCGAGCTGGACTCAGCCTGCCTGCCTCTTTCGCCACAG
Seq C2 exon
CCTGTCCCGAGGGCACCTTTGGGGTCCTCTGTGAGGAGCGCTGCGCCTGCCGGTGGGGGGCCGCCTGCCACGCCGTCACTGGGGCCTGCCTCTGTCCCCCGGGGTGGAGGGGCTCGCGGTGTGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(70.8=77.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGGGGGTCTTTGAAG
R:
CTCTCACACCGCGAGCCC
Band lengths:
252-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development