BtaINT0092009 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47514461-47515953:+
Coord C1 exon
chr19:47514461-47514816
Coord A exon
chr19:47514817-47515903
Coord C2 exon
chr19:47515904-47515953
Length
1087 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TTTCTGATTTCTGTCTACAGGTT
3' ss Score
11.36
Exon sequences
Seq C1 exon
CTGATTATGAGATTAATGCCAACAAATATTGGAACAACTTCTACAAAATCCATGAAAACGGGTTTTTCAAGGATAGACATTGGCTTTTTACTGAATTCCCAGAGCTGGCACCTAGCCAAAATCACTTGAAGAATTTGCTCTCAGAGAATAAGAGGAGTGAAGTATATGAATACTATAGAAGCGGTGAGGATGGACCTGATTTAACAATAGAAGAACAGCACCGTTGTTCTTCTGTTAGCCTTGGAGATAAGACACAGCCACCTCTTACGGAAGAGAGTGTAACTCAGAAGCTCCATCACCTGGAAATCTGTGCTAATGAGTTTCCTGGATCCTCCGCCACCTACCGAATACTCGAG
Seq A exon
GTAACCTCCCTTTATTGTCCTGGCAGTGGGGTTAGCGAGGCTGTCTTATGCACAGAGGGTGGCACTAGAGAGGATGAGCCCCAAAGTAACTTCTGATGATGAAGCTGACTAGACTTACCTCCTTTATGTTGGCCTGGAATCACCTGCATTTTTGAGCTTTTGAAATGTCCTAGTTGCAGACCAGATGCCTTGGTCATGACAAAGATAGATCACCTGAGGTGCTACCTGGGAACATTATATTCTGTCCAAAAGTTGTAGTGTCCTGCTAACCCTGCCATCTAGTAGAGAGTCCCAGGTCAGAAGACAGCTTCTGTTACTTCTGATACAGTTATGAGATGGAGAGGTTAGTTAGGATGGTGTCTGCTTTTCAGGTGTGGAGATTTTTTGTCTTCTCAGTCTGTATGTGTGGTAGAGGCTCGGCTAGGCCTGAAGAAGAAAAGTGTGCACTGTAAAGTGACTATTCACAAAAGTGACTACACACCCCACCAGAAGCTGATTAGTTTTGGGACTGAGTCCTCTGGCATGACTTTGTGTTGGTCCCTGATCCTCCCCAAGCGGAGTGGGACTTCTGCCTCATAGTTATTATGGGGTTAATTGAGATAATGTATATATAATGGCTGAGGATAGTGTCTGACACATAGTAAGCTCTTAGTAAATGGTGCTATTTTCATTATTACCACACCCAGCACTGAACTTAGGACCGTGTTGCCGTGGTTCACCTCATGACTTTTTCAATCCAGTCTACTAGAAACATTTTTCCAGTAATGGTATAGTGGAGCTCAGTAAGAAAATACTCTGTTTACAGGACCATTTGCCCAAACTCAAAAAGTAAAAGCGGCCCATGCTCTTTTTCCCAGACCAGGTCCCATGCTGCTAATAAAAGCCCATATCCTCGTCTACTGTGGCTACCTCTTTAAGGGTTCCTGAGGTCACGGGCAGGGAATGTCATGATTACTCTAGCTCTGGTCACTACACCTTTCCTAATACAGTAAGACAAATTGTTTATTGTTGATTATTTATTTACTTTAGGGAATTAACTCTTTGGGAATTTTGTGATTAATAGTTCATTTCTGATTTCTGTCTACAG
Seq C2 exon
GTTGGTTGTGGTGTGGGAAACACAGTCTTCCCAATTCTACAAACTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(15.4=24.4)
A:
NA
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATCCATGAAAACGGGTT
R:
TGGGAAGACTGTGTTTCCCAC
Band lengths:
347-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development