GgaINT0143064 @ galGal3
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2243672-2245435:+
Coord C1 exon
chr27:2243672-2244024
Coord A exon
chr27:2244025-2245385
Coord C2 exon
chr27:2245386-2245435
Length
1361 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
CATCTGCTTTGTTTGTGCAGGTT
3' ss Score
9.47
Exon sequences
Seq C1 exon
AAGAATATGAGGTGAATGCTAAGAGATACTGGGATGACTTTTATAAAATCCATGAAAATGGCTTCTTCAAGGACAGGCACTGGCTGTTCACTGAATTTCCTGAGCTGGCACCAAATAGGAACCCAAGTCAAAATGAGGATTCTCTGTGTGAATTTAGCTGCAAAGAGGTATCCAAAAATGAAGGGCTGGGAAGCTGTGAAAATGGACATTGCACGTTAGAAAACAGAGCAGAGAATCAGCTGAACCTGCTAAAAAGCAGTCCTAGGTTCTGTACAGAAGAGCTGGCTCCACAGAAGCTGAAACAAAGTTATGAAGATTACCCAGGATCCTCTGCTTCTTACCGTATATTAGAG
Seq A exon
GTAATAGCTATGAAACAATGAATCACACATTGAGTGGTTTCTTGTATGAGTGTTTGTGTGACTGGGTGATGGATGTAAAAATATGCATCCTGGCAAACAACAGGTGAGTGGGAAGATCAACTTACATCAGTAAAAAGAGAGGGCAACTTAGAACTGTTGGGACTCTTTGTTCAGACTGTAGGCACAGAGCGCAAGGACAAGTTTTCAAGTTTAAAATGAAAACTCTCATGTTCTGATGTTGCAACAAGCTTTTAAATGTCATCTTTTCTATAAGAAGTTGATTCGTTTATTTGTCTGTATAAATCTTTCCTTTATCTTTTATGGTTTTAATGTTTGTGCTGATTCTTGTTTGTCCTGGGAGGCGTGAAATGGAATAATGAAACCAAGAATGTAGAGATGCTGTTTGTTTAGGACCTTACGTTCCATCTAATAACAGGAAATCTCAGATTAATATAGGGTATCATGCTTGTCCAAGTCAGATTTTTAGTACTTATACATATTAGACTCCTGACAGCTCATGAAGACTTCTTGCTCTGCCACCTCTAGTTTGTTCAGTGTAGATATCACCTTTTTTGTTGAGTGCTCCTGTTCTGTGGAAATTCTGCCTTTCCAGGGAGAATCAATACGAAGAGTCCTTTAGATTTACATTTAATCTGAGCCCTTGAGACTTCCTCAGACAAATGTTCTTGGGACACTGTGGCTTTCCTGTCTCACCTGAACATTCTCAGTGCCACATGTCACTGCATGCCCTTTGTGTTTTTTTCTTCTCAGACTTTCAATTTTACTGATTATTTAGACATTCAGGGAGAAGTATTCTAAACCCAGTTGTGTGAGACCTCAAATGGGACTTCAGATGGGAGCAGACATAGGAAATAACAAGGTACAATCATTGCAGGCCTAATTGTAACTTGAGGGAGAGCCATCTAGTGAGGGTAACTCTGAAACAGCAGAATATAATTATAGTAAAGCAAACTTCTTTTTCTATTGCTCTGATTTGCTGTGGAAGGGAATGTAACTAATCTATGTTTTTTTTCCACTGCTTCAGTGACTCATACATACCAGTTGTTATGCTTGGGATTCCAGCAATAACTGTTTTCAGAAGAGTAGCAATATACAGTTTGTTAGTAAGATTTCTAGGAGAACAGGCTGGTTTCCCACAGTGCTTGTATGTAAGCCTGCTCCTCAGCACTGAGTGTATTCAGATCTTGCAGTGATATTTGCAAATGGTCATTACTGTGCTCATTCGTTACTTCTGAGGTACACTTTGTTCTGTGGCTGTAGAGAGTTAATTTGAAATCAGCTGCATGGGATGTGTTGAAGGAGTAATTTTCATGATGTGTACATCTGCTTTGTTTGTGCAG
Seq C2 exon
GTTGGCTGTGGTGCTGGAAATACAGTCTTCCCAATTTTACAAACCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(16.8=27.1)
A:
NA
C2:
PF082427=Methyltransf_12=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAGAGATACTGGGATGACT
R:
ATTTCCAGCACCACAGCCAAC
Band lengths:
358-1719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]