BtaINT0092853 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031741 | MGC157324
Description
Bos taurus zinc finger protein 322 (ZNF322A), mRNA. [Source:RefSeq mRNA;Acc:NM_001098155]
Coordinates
chr23:31207328-31216020:+
Coord C1 exon
chr23:31207328-31207416
Coord A exon
chr23:31207417-31214604
Coord C2 exon
chr23:31214605-31216020
Length
7188 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
ATTTCTTCTTTGTCTAACAGGGT
3' ss Score
10.55
Exon sequences
Seq C1 exon
GAGAGGCAAGAATTGAGTATTGTTAATAACTGTGGACTGGAGACCTTTTGGAGCCAAAAGGAAGACAGTCTTGAGTCTTTCTTGTTACG
Seq A exon
GTAAGTAGCATAGCAAACTGTGTTTCCATATAAATGGTGGAGTTTTAGGGGACACGTGAGGGAAACTGGAGGAGAACAAGAAGAAATGGGAGAAGATACTTGGAAAGAAGATCATGACCCTTTCTTAGCTCCTGAGGTAACCCTGCCTACCAATGTTAGTGTATTTTCTACTCCTTTCCAACATGCTTATTCACCATAGGCTTTTAATTATTCCTTCATGATTGATTTGCAGCCCCCAAAAGACAGTATACTTAATGCAGGCCCTGGAGTCAGAGGATGGATATTTACATCCTGGCTCTGCTATTTACTAGCTGTGAGTTCTTAGTTATTTAACTGCCCCGAGTATCATTTTTCTATCTGTAAGGTACAAACATTCCTCATAATACCTATTTTACAATCTTGGAAAGATGAAATGAAATAATCCATGTAATCATTGAAAAATAAATGAGATAATCCCTAGCCTGGGGACTGATACATTAAGCATTAATAGATAGTGCTTTATTGACTTTAATCTGCTTGTCCCATACATCCTTTAACTGTAAGGATGGCCTTGGTCTTTGAAGTTCTACACTCAGCCTGTCTGCTTGGACTCTTACCGCCAGCCTGCCTGTTCTGTGCACTCCAGTCCTAGCCATGAAGTGAGAACCAGTCTTTTCCTAGAATGAGATAAGAGAAACCTCTTAGCATAGGGTACTCTGAAGCTGAGACTTGAAGGATATATTTTGGTTTGCCATTTGAAACAGCCAGGGCTGTTAGCCTAGCCTAGATTGCTACTGAGGCTTAGAGGATAATGATGACTCTTTTTTGGTTCAGATATTCATTCATATTTTTCATTCATTCAACAGACATATTCTAGACACTAGGAATATTGCAATGAACAAAAGACTTAAGTCCTAACCATAATGAAAGTTATATTCTAATAGGAGAGAGAAACAAATGAACAGATATAAAATACCACAAAGTTGGATGATAAGTGCTCTGGAGAGAAATAATACATGCTAAGGGGACATAGCTATTTTAGTTAAAGTTGCCAAGATGTGCCTCTTTTTGAGGAAATAATTTTCAGAGACTTGAGTCAAATAAAGGAGCAAACTCCTTGGGTGAAAAGCATTCTAGGTAGATAAAGCAAGTGTAAAGATTCTGATGTGTTATGGGAGGCAGAAAAACTATGTTAGGTGGTATAGTGAGAATCTTAGGTTTTATTGTTAGTGTGGTAGAAACAGTTACAGTATTTTTCAGTGGGGAAGTATCATGATTTACTTTAAATTTTGACAGCCAGACTGTATATTATTTTCTAGGTGCTGACATCCATCTTAAAGACTCAAATATGAATAAGAAAATGGTTTCCTTATTTTTAATTTTTTTCATTGGTGCCCTACAAATTATTGGCTGTTTAGGGCAAATATACACTCTGAACTGATAAAATTAAGGAATATTATACTTCATTTACCAGGCTATGACCACGCTCAGAATTGTGTTTATACTCTAACTCTCCTATTGACTATAACAGTAGTACACATTTTAATAAGATAGAACTCCTGGAAAGCCGCTGTCTTATAGTAGCTGTATGCATGACTCCAGAGTTTTACATAGCTGTGATTCTGAAGCCTTCCTTTTCCTTCTAACATTTCTCTGTAAATTTTTTTTTTCTAGTTTTTTGCATAATCTTCATATTAATCATTAACTGATTGAGTCATTTCATTATTTATTACTTAGTTAATTATTTTAATGCATTTTGAACAAGGCTGTGTGTAAAAGACAGGCACAGACACAGAGGATGACCTCAAGAAATGGTAGGGTTTTTGTGACCCTGAAGATGGAATTAAGAAAATAATAGAACCTGCCATTTACTGAGCATCTATTAATTGAGCACCTAGGTCCTGAGCCAGGTCCTTTATTGACAGTATCCTAGTTCTCATGGCAACTCTTTAAGACATGTAATAGTATTTTCCTTATTTTATCAAAAGGGAAATGAAAGCTAAAGGAAGTAACTTCTCATAGCTACAAAAGAACATAGTGGGAATTCGAACCAAAATCTGATTCCAGGGTTTGAACATTCAACTTCAGCTAGCATAGTATACCAACTCTCAGCTCCCATGTTTTTAAAACGCAAGATAAGATACATTTAAATTTTGAAATAATTTCATATTTACAAAAAGTTGTAAAATAATATAAGAATGCTCATACACCCTTCACCCACAGTCCCTAAATGTTAACATTTTACTGTATTTATTTTATGAGTCTGTCTACTTACTCCTCTGTACATACATGTACCTCTGTGTACATTTTTTTTCTGAACCTTGTGAGAGTAAATTACAAACATCATGGCTCATCTCAAATGATGAGAGAATTAAGTCCTAAAGTCCTAAGACATGCTAAGCCCTAAAATCCTAAGAGAATGAAATCCTAAAGTCATAGGTATTTAATGAATTAACTTCTCTCCCATGTAGTGCTGCTAGCTATATGCATCTTTGAGAGAATTAAAAAAATAGTTACTCAAATCATTTTCCATAGGGCTTCATTCTTTCCCAGAATGCTAGTTGAAAAAGCCTGTCTTAAATACTTAATTTTTTTTCCCTAAAAACAAGTCTGTTCTCTTTTATTATCATTACAGTTATCAAAGTTAGGAAATTAACTTTCATATAATACTATTATCTGATCTTGAGACATTATTAGAGTTTAGCCAGTTGTTCCACTAATGTCATTTTAGGAAAAGAAGAGTTATTTTTGTTGTCCAAGATCCAATCCACCATCACCCGTTTCCTTTGATTGTCATGTCTTTATTGTGGAACATATCCTCAGATTTTGTCTTCCATAACTTTGACTTTTTTTTTTTAAGTTTAAGCCATTTATTTGGCAGAATTTCCTTCAATTTTGCTTTGTCTAGAGTTTCCTCCTGATGAGATTCAGGTTACAATGTTTAATGTTCTGTTCCTCTCTTTGTATCATATTAGGAGACAATTTTTTATCTTGTTACTGATGACGTTAACTGATCATTAGTTAAGATGGCATCTTCCAGGTTTCTGTGAAATTACTTTTTTTTTGTCTTTGTAATTATTAAATGTCTAGTGGGGAGATATATTCTGATTGTGTAAATATCCTGATTCTCAAAACTTTTTATCCACTGTATTTTTGCCTGAAACAATTGTTGCTCTTCTTTTGATTAGACGTGATGTTTTTAATTCCATCATTTCGTCTACATTTAATTGTTGGCTTCTTTAATAAAGGAAAAAACTTTCCCTTCTCCCTTTTATATTCACTTTTTAAATGAGTATGGATTCATCGATTCTTACTGTATTACTAATTTATTACTGTCAGTATTTATTTTGATGTTGTTTGTTGCAGATTTGTGTAGTGGCAGCCCCTTCAGTGAGGCTTCTGGTCCTCTTAGCATATTATCACCACTCTTTGAGCACTTCCTTGTTTTCTGGAACAACAAGATGTACCAGGTTCATTGTGTACTTTCTAAACCCTGAAATTAGCCATTTCTCCAGTGAGCCCTGGTTACTTTCAGTGGGAAATGGTGTTTAGAAACCAAAATCTGAGTGCTTGGTATGCTGATTACTACTGGGATTTCATTGTTTCTGTGATCTCTCAGCAGACATTAGGAGACCAAAAAGAAAAATACTTTAACATTTCTGTTTTCTCTGTGTATACTTCAAAACTTTGACTTCCCACTGATACTTGTAATTCCAGTTAAACACTGTAGATAGAGAGTTCATTCTAGCCTTTCGCTTTTCTATGTTTCTGACTCCCTTGTCTGACAGTAAGACATCTGCTTGCCTTTATATTTACTTATTTTGTCATTCCTAGTCTGTGCATTAAGTAGTGAACCTTTACCAACATGGGGGAAAACTCCTACTAATTATAGTTCAGTAATTGTTTGTAGTTCTATTTATCTTTAGTTTGAGTTTATATAATTCTAATACTGTATTGCAGAATTTTTTGAGTTATTTCCCTCCTGGGTGGTTTTATTATTAATTTGAAATACAGACTTCTTTGTTTTTATTTGAATTTTATTTGAATTCTATTTTAATTATTTTCTCCCCTAGCTTTTCTATTTATTGAATATGTGAAATGTAACAGTTTAAAAAGTTAAAATGTGTGTTTTTACAAAAATATGTACTAAAGAAGCGTATGATTCTCTTTCCTTCACCCTTTGCTACCAGTTTCACTTTCCTGTCCTTTTGATCCCATTTCCATCTGCCTTGTAATAACCAAACTCATTAGTTCTGTCTTTTCTGAGTTTCTTTTTGACCAAATGCATAGATCCATGTGTAATTTTTTAAGTTCTACTTCATTCTTACAGAAAATATAGCATACTGTTTTACACCAGTGCTTTCTAAAATTTACAGTTTATCCTGAAAACTGCCCCACATCAGTTCAGAAAAGTAACCTTCATCCTGTTTCACAGCTACAGAGTACCTCATTATATGTGAACATACTTGCTCTGTGCCAGACACTGTCACAGGTGCTAGAGAAACAGCAACAAATGAAATGAACTAAAATCCTTGTCCTTTAAGGGGCTTACATTGTCCGGAGAAAAATAAGACATGAAACGAGAGGAAGGGTGTTGCATGTGTGGGTCATCTGGGATGGAGATGTGTCATAATTTAAAATAGGATGGTCAGTTATGGCTTTAATGAGAATATGACAATTTATCAAAGATTAGAGTGAGATGAGAAAGGGAACCTTGAAGATCTTGAGGATGAGCACTTTAGCAGGGAGAGACTTACAAGCATAAAGACCTTGAAATGGAAGTGAACCTGGATTGTTTGAACAAAAGCAAGGAGAGCAAGATGCCTGGCATACAGTACAGATGAGAAGAGCAGGGAAGTGTGTCAGAGGGGTAGCTAGGAGTCAGATTTCCTAGGGGCTTATAGGTTCTAATAGGAGCAGTTTTGTTGGAGCAGTGAAAGTGAGTATTTGTAGTATGTTCCAGAAACCTTGATAAGATTTAAGATAAGAATTAAAGACAATGAACAGATTGATTTCTTTTGAGGAATTTTGCTGTAAAGAGAAAGAAGTGAAAGTAGCTTGAGGATGAAGTGGTTGAGAGAAGTTTCTTGTTGGTGCTTTTGTTTTAGGAGCGGTAACAGCTAGTTTGCTGATTAGTATGATTCAGTAGTAAAAAACAAATTGGTATTGCAGGAGAGAGAGGACAGAATTGCAGGAGTGATGTCCTTGTGGTGAAAAGGGGGTGGAATCCAGTACCCCGACCAACAGATTGTCCTTAGATTGAGCGGGGGCAGTTTGTCATCCATGGTAACAGAAGGAAAGATGGAGTGCATGACCACACTTGCAAGAGGTTGGTTGTTGTGGTGGGAGCACGTACAAGTGTTTTTTGTGTTTTTGTTTTTTTCCTTCCTTAGGTTTTTCTCAGTAAAATAGAAAGCACAGTCATCAGTTTTTATTCCCTAGGTGACAGAGGAGGGGGTTTGAATATATGAGAAGGTCAAACATGAAATGATCATTGAAAAGAGTAAGTGTGAAGGATATGGAAAATGGTGTTTCTTCCCTTCTGTTTCTCATGTTTCTTCTTTAGTATATCATTGGTAGTTGATAAATGCTGCTGCTGCTAAGTTGCCTCAGTTGTGTCCGACTCTACAGCCCCATAGACGGCAGCCCACCAGGCTCTGCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCATGTCTGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCCGAGTTGATAAATACAATAGCTTATTACTTTTATCTTTTTCTCCCTTGAATCAGCCCATTGTTTTCCTTAGTGTTAGTCTATATTCCTGTATTTCCTGTTGGGCTTGAATGTTTAACTTATCTAGTGGTGTAGCCCTACAAAAGATAGGGCCTGAGTAGAAAGACCTCAGGAAGCTCAGTAATAAAGAATCCGCCTGCCAATGCAGGAGACAAGGGTTCAGTCCCTGGGTCAGGAAGATCCCCTGGAGAAGCAAATAGCAACCCACTCCATATTCTTGCCTGAGAAATTGCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAAAAGATTTGGACACGACTTGGTGACTAAACAACAACAACAGCAAGACCTCAATGTCTCTCTTCTGTCTGTCTTTCCTTTTTAATCTCCCAGTCATTTGAAGATGTGATTGTCTGCCTTACTGGGGAGGAGGAGTAGAGTGGTTAGACTCTGAGCACAGGGCCCTTTTCAATAATGTTATAAAGGAGAATTATATAATTGTGATCTTTCTGTGTATAAGGACTTCTTTAAGATGCTCAATCTTTGGATATTTCCATACATGTGCATCCCTCTAAAAACAAGAAAACCTGTTCCATATCTCTTCACTGTACAAAGAAAAGCCTGGCATTAAAGACAGATTTGAAGCCCAGGCTTTTAGCTACAGTCATTTTTCTTTTTGAGCAAGGTTTGTGCTCTTATGATCATATCAAAGCAGAATCTTAGATCCCTTTATCATAATAGTTATTATAAGAGCTAACACAGAATGCTTACCATGAAATACTGATTAACTTATTATTCAACTCAATGATGTGAGGTTAACTTCCATCATTCATCCATTTTATAAATGAAAAAACTAGCTACAGAGTGATTAAGAAACTTGCCAGACATCACACAGCTAGGATGATAGTAAGAGAAACTTTTCTTTCTCTTTACACTGAGAATTCTAATAATCATTAACCATTTCCTTCCAAACGTTCTACAGAAAGGACTGCACAGGTATTCATAGTCCCTTTTGGGTTGTTTTCCTCAAGAGCAGGCATATTAGTTATTAGATGTCTTGACTACTCAGTTGAACCAAGGGAAGAGGAGGAATCCTGGTTTTGAGATCACTTGAGTTGATTAAAGAAACAATTTTTTCTGGTACTTTCCATGTATGTGTTGCTGATTTGTTTTAGTTAGAGAAAAACCACTGCTGTCAACCCCTGTAAAACGTAGAGCACTTGTGGAATTTGATGCAGAAATTCTGTCTTTTCTACAGCAATTTTAATTGTGAGCATTTTAGTTATGGAAATATAAATAATATTTCTTCTTTGTCTAACAG
Seq C2 exon
GGTTGTAAAGACCACATAAGGAACGAGTGCATGTGATGCTGGAAACTTGTAAAGAGGAACTGCTCATGACTGAAAGGCCTAAGACAGATGTATCTTTCAAGTTCTTATCGAGAAAATGACTGTGAAGAAAATGATGGGTCAGGAAGACCAGTGGAAAACTCCCTAGGAGAGAGCCATAGAAAATGTACACTTCAGAAGAGAGATATAATCAGAGAACTCAAAAAAGGAAAATATATCATGTATGCCCTCAGAAGGGTAAAAAGATTTTTATTCATGTGCATGAGATTACTCAAATAGATGATCAGATATACGAGTGCCTTGAACGTGAGCAAAACTTTTGTGAAAACTTAGCTCTTATTATGTGTGAGAGAACCCACACTGGGGAGAAACCTTATAGATGTGATATGTGTGAGAAAACCTTTATCCAAAGCTCAGATCTTATTTCACATCAGAGGATCCACAGTTATGAGAAACCTTATAAATGTAGCAAATGTGAGAAGAGCTTTTGGCACCACTTAGCCCTTTCAGGACACCAGAGAACGCATGCAGGTAAAAAATTCTATACATGTGATATCTGTGGCAAGAATTTTGGTCAGAGCTCTGATCTGCTTGTCCACCAGCGAAGCCATACAGGCGAGAAACCTTATCTGTGTAGTGAGTGTGATAAATGCTTCAGCCGAAGTACAAACCTCATAAGGCATCGAAGAACTCACACGGGTGAGAAACCGTTTAAGTGTCTGGAGTGTGAAAAAGCTTTTAGTGGGAAATCCGATCTTATTAGCCACCAGAGAACTCACACTGGTGAAAGACCCTACAAATGTAATAAGTGTGAGAAAAGTTACCGACACCGGTCAGCCTTCATTGTTCATAAAAGAGTACATACTGGGGAGAAGCCCTATAAGTGTGGTGCCTGTGAGAAATGCTTTGGCCAGAAATCAGACCTTATTGTACACCAGAGAGTCCACACAGGTGAGAAGCCGTATAAATGCTTGGAATGTATGAGAAGTTTTACCCGGAGTGCCAACCTCATCAGGCACCAGGCAACTCACACTCACACTTTTAAATGCCTTGAATATGAGAAGAGCTTCAGCTGTAGTTCAGACCTTATTGTGCATCAAAGAATTCACATGGAAGAGAAACCACATCAGTGGTCTGCATGTGACAGTGGCTTCCTCCTAGGCATGGACTTCGTTGCCCAACAGAAAATGAGAACTCAGACAGAGGAGTTGCATTATAAGTACAGTGTCTGTGATAAAAGCTTTCATCAGAGCTCAGCCCTTCTTCAACATCAGACAATCCACTTTGGTGAAAAACCATATATCTGTAATGTGGCTGAGAAAGGTCTTGAGCTCAGCCCTCCCAATGTATCAGAAGCCTCACAGATGTCTTGACCAGACAAGAAGTTGTTATACCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031741:ENSBTAT00000045005:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]